Appendix VI – Resource Library

Resource Library 

The Resource Library is a collection of data and reports regarding salmonids in California. Information was collected during the review process in each of the three regions evaluated by the California HSRG. The Library includes a range of subjects for both hatchery and natural-origin fish, including adult spawning and juvenile rearing studies, pathology reports, and hatchery annual reports. The Library is organized by region, species, and general documents. Regional sections contain documents for each species and hatchery. The General California section is for reports that are not region-specific (i.e., “Review of 2009 Ocean Salmon Fisheries”). These files may apply to more than one region.

When available, a hyperlink is provided for each citation connecting to a PDF, Microsoft Word or Excel file. A search tool is also provided.

Region 1 – Klamath/Trinity

Barnhart, Roger A. 1994. Salmon & Steelhead Populations of the Klamath-Trinity Basin, California. In Proceedings of the Klamath Basin Fisheries Symposium. March 1994. Barnhart 1994.pdf

CDFG. 2004. Proposed interim disposition of unmarked adult coho salmon which enter Trinity River Hatchery (TRH) and Iron Gate Hatchery (IGH) this spawning season. Letter to NOAA from Gary B. Stacey, Fisheries Program Manager. TRH and IGH – Letter to NOAA re disposition of un-marked coho at IGH & TRH 3GBS.doc

CDFG. 2008. Annual Report: Trinity River Basin Salmon and Steelhead Monitoring Project, 2005-2006 Season. California Department of Fish and Game, Northern California – North Coast Region, 601 Locust Street, Redding, California. Trinity ANNUAL REPORT05-06FINAL1.pdf

CDFG. 2009. Fish Pathology presentation for CDFG Fish Hatcheries. California Department of Fish and Game, Sacramento, California. 16-Fish_Path_Presentation_for_Hatcheries-1-2-9.pdf

Chesney, W.R. 2000. Annual Report – Study 3a1 Shasta and Scott River Juvenile Steelhead Trapping 2000. California Department of Fish and Game, Steelhead Research and Monitoring Program, Yreka, California. December 2000. Shasta_1989-FP-2.31&89-FP-2.41-KNF.pdf

Chesney, W.R. 2002. Annual Report – Shasta and Scott River Juvenile Salmonid Outmigrant Study, 2000-2001 – Project 2a1. California Department of Fish and Game, Steelhead Research and Monitoring Program, Yreka, California. January 2002. Shasta_cdfg_chesney_2002_0001scottshastajuvs.pdf

Chesney, W.R. and E.M. Yokel. 2003. Annual Report – Shasta and Scott River Juvenile Salmonid Outmigrant Study, 2001-2002 – Project 2a1. California Department of Fish and Game, Steelhead Research and Monitoring Program, Yreka, California. January 2003. Shasta_cdfg_chesney_2002_scottshastajuvs.pdf

Chesney, W.R., B.J. Cook, W.B. Crombie, H.D. Langendorf and J.M. Reader. 2007. Annual Report – Shasta and Scott River Juvenile Salmonid Outmigrant Study, 2006. California Department of Fish and Game, Anadromous Fisheries Resource Assessment and Monitoring Program. March 2007. Shasta_Scott_AnnualReport_2006.PDF

Chesney, W.R., W.B. Crombie and H.D. Langendorf. 2008. Annual Report – Shasta and Scott River Juvenile Salmonid Outmigrant Study, 2007. California Department of Fish and Game, Anadromous Fisheries Resource Assessment and Monitoring Program. December 2008. Shasta Scott River Annual Report 2007 fnl.pdf

Chesney, W.R., W.B. Crombie and H.D. Langendorf. 2009. Final Report – Shasta and Scott River Juvenile Salmonid Outmigrant Study, P0610354. California Department of Fish and Game, Anadromous Fisheries Resource Assessment and Monitoring Program. April 2009. Shasta and Scott River 2008 Final Report 041509.pdf

CDFG. Chinook Salmon, Coho Salmon and Steelhead Run-size Estimates, Trinity River, CA. p_Sinnen1 Trinity All Species Run size.pdf

Hoopa Valley Tribal Department of Fisheries. 1997. Monitoring of Out-migrant Juvenile Salmonids in Mill, Pine, Supply, and Tish Tang Creeks on the Hoopa Valley Reservation, 1992-1995. Hoopa Valley Tribal Department of Fisheries. Hoopa Res Tribs_1992-FP-12-HVT.pdf

Hopelain, J.S. 2001. Lower Klamath River Angler Creel Census with Emphasis on Upstream Migrating Fall Chinook Salmon, Coho Salmon, and Steelhead Trout During July Through October, 1983 Through 1987. California Department of Fish and Game. Hopelain 2001 klamathcreel.pdf

Hopelain, J.S. 1998. Age, Growth, and Life History of Klamath River Basin Steelhead Trout (Oncorhynchus mykiss irideus) as Determined From Scale Analysis. California Department of Fish and Game, Inland Fisheries Division. Hopelain Admin Rpt 98-3.pdf

Israel, J.A. 2003. Life history, ecology, and status of Klamath River steelhead. Klamath Steelhead Life History Josh_Israel.pdf

Kesner, W.D. and R.A. Barnhart. 1972. Characteristics of the fall-run steelhead trout (Salmo gairdneri gairdneri) of the Klamath River system with emphasis on the half-pounder. California Fish and Game 58(3): 204-220. Kesner and Barnhardt 1972.pdf

Lee, D.P. 1984. Draft Klamath River Steelhead Studies, 1977 through 1983. California Department of Fish and Game. U.S. Bureau of Reclamation. July 1984. Lee1984 Klamath Studies.pdf

Letritz, Earl. 1963. Trout and Salmon Culture (hatchery methods). State of California, Department of Fish and Game, Fish Bulletin No. 107 (1963 reprint).

Moffett, J. W. and S.E. Smith. 1950. Biological Investigations of the Fishery Resources of Trinity River, California. USFWS Special Scientific Report: Fisheries No. 12. moffett and smith 1950.pdf

Naman, S.W. 2008. Predation by hatchery steelhead on natural salmon fry in the Upper-Trinity River, California. Masters Thesis, Humboldt State University. December 2008. Naman2008_PREDATION BY HATCHERY STEELHEAD ON NATURAL SALMON FRY IN THE UPPER-TRINITY RIVER, CALIFORNIA.pdf

Naman, S.W. and C.S. Sharpe. 2010. Predation by juvenile hatchery salmonids on natural produced salmonids in the freshwater environment: A review of studies, two case histories, and implications for management. Naman and Sharpe 2010 Summary of predation studies.pdf

NMFS. 2010. Biological Opinion on Operation of the Klamath Project between 2010 and 2018. File Number 151422SWR2008AR00148. FINAL-Klamath_BiOps.pdf

NMFS. 2010. Klamath River Basin: 2010 Report to Congress. Available online at: http://swr.nmfs.noaa.gov/klamath/. 2010_Klamath_Report_to_Congress.pdf

Rounds, S.A. and A.B. Sullivan. 2009. Review of Klamath River total maximum daily load models from Link River Dam to Keno Dam, Oregon. U.S. Geological Survey Administrative Report. 37 pages. klamath_river_TMDL_model_review_final.pdf

Scheiff, A.J., J.S. Lang, and W.D. Pinnix. 2001. Juvenile Salmonid monitoring on the mainstem Klamath River at Big Bar and mainstem Trinity River at Willow Creek, 1997-2000. U.S. Fish and Wildlife Service, Klamath River Fisheries Assessment Program, Arcata, California. Klamath-Trinity_usfws_scheiff_2001.pdf

Sinnen, W., A. Hill, J. Hileman, S. Borok, and M.C. Kier. 2010. Final Annual Report Trinity River Basin Salmon and Steelhead Monitoring Project 2008-2009 Season. California Department of Fish and Game, Northern California – North Coast Region, 601 Locust Street, Redding, California.

Sinnen, W., P. Garrison, M. Knechtle, A. Hill, J. Hileman, and S. Borok. 2009. Annual Report Trinity River Basin Salmon and Steelhead Monitoring Project 2006-2007 Season. California Department of Fish and Game, Northern California – North Coast Region, 601 Locust Street, Redding, California. Trinity_2006_TRP_Annual_Report_secure.pdf

Underwood, K., H.D. Langendorf, C. Diviney, A. Debrick. S. Daniels, W.B. Crombie and W.R. Chesney. 2010. Final Report – Shasta and Scott River Juvenile Salmonid Outmigrant Study, Prepared for PSMFC Contract No. 09-62. California Department of Fish and Game, Anadromous Fisheries Resource Assessment and Monitoring Program. November 2010. Shasta and Scott River 2009 Final Report 112410.pdf

USFWS. 1998. Klamath River (Iron Gate Dam to Seiad Creek) Life Stage Periodicities for Chinook, Coho, and Steelhead. Department of the Interior, U.S. Fish and Wildlife service, Coastal California Fish and Wildlife Office, Arcata, California. klamath_lifestage_periodicities_1998.pdf

USFWS and CDFG. 1956. A Plan for the Protection and Maintenance of Fish and Wildlife Resources Affected by the Trinity River Division, Central Valley Project. November 1956. CDFG-USFWS 1956.pdf

West, J.R., O.J. Dix, A.D. Olson, M.V. Anderson, S.A. Fox, and J.H. Power. 1989. Evaluation of Fish Habitat Condition and Utilization in Salmon, Scott Shasta, and Mid-Klamath Sub-basin Tributaries 1988/1989: Klamath National Forest. Annual Report For Interagency Agreement 14-16-0001-89508. United States Department of Agriculture, Forest Service, Pacific Southwest Region. Shasta draft Rept_ 09_ver3.pdf

Unpublished Data Files

Age Composition of the 2001 Klamath River fall Chinook Run. (Excel file) KLAMAGECOMP01_final_jan03.xlw

Age Composition of the 2002 Klamath River fall Chinook Run. (Excel file) KLAMAGECOMP02_Final Feb10_04.XLs

Age Structure of Klamath Chinook Harvest. Excel File. Klamath Chinook Harvest Rates.xls

Appendix 1. Run-size, harvest and spawner escapement estimates for right maxillary chipped, Trinity River Hatchery-produced coho salmon returning to the Trinity River, upstream of Willow Creek weir, brood years 1994-2005. Excel File. T3_app1_08 Trinity Coho.xls

Appendix 2. Naturally and Trinity River hatchery-produced coho salmon run-size, in-river angler harvest and spawner escapement estimates for the Trinity River upstream of Willow Creek Weir for 1997-2008. Excel File. t3_App2_08 Trinity Coho.xls

CDFG. Estimates of CWTs spawned at TRH. Excel File. TRH_CWT_spawn_06-10.xls

CDFG. Number of Steelhead and Coho spawned at TRH and estimates of hatchery spawners in natural areas. Excel File. coho&SH_spawn_05_10.xls

CDFG. Stocking Goals for Trinity River Hatchery. TRH Stocking Goals.doc

CDFG. 2004. Chinook 2004 Fall Chinook Sounds and Length Statistics. Excel File. Wild&HatcheryLengths.xls

CDFG. 2010. Scott, Shasta, Bogus Fish Counting Facility Count Summary, 2001- 2010. California Department of Fish and Game, Northern Region, Klamath River Project, Yreka, California. Shasta Scott Bogus Summary 2010.xls

CDFG. 2011. IGH Egg to Smolt Survival. Excel File. IGH Egg to Smolt Survival.xls

Chesney, D. 2011. Pre-spawn mortality of coho salmon (Males and females) held at Iron Gate Hatchery. California Department of Fish and Game, Klamath River Project. coho_prespawn_mort.xls

Coho Spawning Survey 2003-2004. Excel File. coho spawn survey 2003-2004(results).xls

Gough, S. 2010. Hatchery Contribution of fall run Chinook Salmon in the mainstem Klamath River (Iron Gate Dam to Shasta River) based on carcass surveys, 2001-2010. United States Fish and Wildlife Service, Arcata, California. KlamathHatcheryContribution Updated 2010.xlsx

Hampton, M. 2010. Iron Gate Hatchery Chinook Salmon CWT Recoveries and Contribution Rates. California Department of Fish and Game, Yreka, California. Updated March 29, 2010. Total IGH Contributions with Prod Mult Final Ver 2.xls

Hatchery Summit Meeting Notes, August 26, 2009. Word File. Hatchery Summit Meeting Notes- August 25-26_IGH Notes for Kevin.doc

IGH Chinook Salmon CWT Recoveries and Contribution Rates (Excel file) Total IGH Contributions_distribute_2010.xls

IGH Fish Runs 1962 to 2004. Data Tables. Word Doc. IGH Fish Runs 1962 to 2004.doc

IGH. 2010. Iron Gate Hatchery Survival Data. IGH Hatchery Survival Data.xls

IGH. 2010. Iron Gate Hatchery Coho Returns 1996-2009 Fin-Clip Numbers. Coho Returns-Fin Clip Numbers 1996 to Present.xls

Marshall, L. 2011. Ponded to release counts 2005-2009. Ponded to Release.doc

Marshall, L. 2011. Raw Data Spawn to Hatch for Coho, Steelhead and Chinook. TRH Data – Spawn to Hatch.pdf

Number of Male & Female Spawners Used in Spawning Matrix at Trinity River Hatchery. Excel File. TRHspawners_00_10.xls

Pomeroy, K. 2011. HSRG Information (to be added to HPV Tool). HSRG Information.doc

Pomeroy, K. 2011. February Data for the HSRG – Egg take, eyed eggs, fish ponded, and smolts released from IGH 2005-2010. feb data hsrg.xls

Post-season Estimates of Klamath Fall Chinook Ocean Abundance – all adults, 1985-2009. Klamath fall Chinook Ocean Abundance.xls

Sinnen, W. Trinity River Coho (Adult & Jack) Return Information, 1997-2008. Excel File. Trinity Coho estimates_sn.xls

Trinity River Coho Draft AHA, 2009. Excel File. AHA_Trinity_SN.xls

Rogue Basin Studies

Chinook

ODFW. 1991. Rogue Basin Dam Fisheries Evaluation. Effects of Lost Creek Dam on the Distribution and Time of Chinook Salmon Spawning in the Rogue River Upstream of Gold Ray Dam. May 1991. 1991_Lost_Creek_Dam_Chinook_spawning_upstream_of_Gold_Ray_Dam.pdf

ODFW. 1992. Rogue Basin Dam Fisheries Evaluation. Effects of Lost Creek Dam on Fall Chinook Salmon in the Rogue River Phase II Completion Report. October 1992. LC_Dam_Fall_Chinook_Rogue_Phase2_Rep.pdf

ODFW. 2000. Rogue Basin Dam Fisheries Evaluation. Effects of Lost Creek Dam on Spring Chinook Salmon in the Rogue River Phase II Completion Report. February 2000. LC_Dam_Spring_Chinook_Rogue_Phase2_Rep.pdf

ODFW. 2000. Rogue Basin Dam Fisheries Evaluation. Effects of Lost Creek Dam on Spring Chinook Salmon in the Rogue River Phase II Completion Report Appendices. February 2000. LC_Dam_Spring_Chinook_Rogue_Appendices.pdf

ODFW. 2002. Effects of Reservoir Releases on Adult Salmon During a Drought Year. May 2002. 2001_Reservoir_releases_adult_salmon_drought_year.pdf

Steelhead

ODFW. 1973. Ecology & Management of Summer Steelhead in the Rogue River. 1973_Ecology_Mgt_of_Summer_Steelhead_in_Rogue_River.pdf

ODFW. 1990. Rogue Basin Dam Fisheries Evaluation. Effects of Lost Creek Dam on Winter Steelhead in the Rogue River, Phase II Completion Report. February 1990. StW_phase_II_completion_report.pdf

ODFW. 1994. Rogue Basin Dam Fisheries Evaluation. Effects of Lost Creek Dam on Summer Steelhead in the Rogue River, Phase II Completion Report. February 1994. StS_phase_II_completion_report.pdf

ODFW. 2002. The Oregon Plan for Salmon & Watersheds. Population Health Goals and Assessment Methods for Steelhead in the Klamath Mountains Province. Report # OPSW-ODFW-2002-08. November 1, 2002. rept2002-08.pdf

ODFW. 2002. Klamath Mountains Province Steelhead Project, 1999 Annual Report. Report # OPSW-ODFW-2002-09. November 15, 2002. 2002-09.pdf

ODFW. 2003. Klamath Mountains Province Steelhead Project, 2000-01 Annual Report. Report # OPSW-ODFW-2003-08. December 15, 2003. 2003-08.pdf

ODFW. 2004. Klamath Mountains Province Steelhead Project, 2001-02 Annual Report. Report # OPSW-ODFW-2004-08. March 22, 2004. 2004-08.pdf

ODFW. Klamath Mountain Province Steelhead Project Summary. ODFW – Corvallis Research Lab – Klamath Mountain Province Steelhead Project.pdf

Coho

ODFW. 1989. Rogue Basin Dam Fisheries Evaluation. Effects of Lost Creek Dam on Coho Salmon in the Rogue River, Phase II Completion Report. November 1989. 1991_Coho_completion_report_(LCD).pdf

Tributaries

ODFW. 1988. Rogue Basin Dam Fisheries Evaluation. Effects of Applegate Dam on the Biology of Anadromous Salmonids in the Applegate River. Applegate_Dam_anadromous_salmonids_Phase_I_Completion_Report.pdf

ODFW. 1996. Evaluation of the Effects of Elk Creek Dam on Migratory Salmonids. Annual Progress Report 1995 (1 October 1994 – 30 September 1995). June 1996. 1995_Elk_Creek_Annual_Progress_Report.pdf

ODFW. 1996. Evaluation of the Effects of Elk Creek Dam on Migratory Salmonids. Annual Progress Report 1996 (1 October 1995 – 30 September 1996). October 1996. 1996_Elk_Creek_Annual_Progress_Report.pdf

Chinook

_____. 2009. Klamath River Basin Spring Chinook Salmon Spawner Escapement, River Harvest and Run-Size Estimate: 1980-2009. (Megatable) MEGATABLE_Spring-Chinook_20091.pdf

_____. 2010. Klamath River Basin Fall Chinook Salmon Spawner Escapement, In-river Harvest and Run-size Estimates: 1978-2009. (Megatable) MEGTBL_Fall-Chinook_JAN_28_10.pdf

Bartholow, J.M. and J.A. Henriksen. 2006. Assessment of Factors Limiting Klamath River Fall Chinook Salmon Production Potential Using Historical Flows and Temperatures. United States Geological Survey, Reston, Virginia. 2006 Bartholow and Henriksen _IGH Tem effects on eggs.pdf

CDFG. Techniques Used to Monitor Naturally Spawning Chinook Salmon Escapement Levels in the Klamath Basin. Power Point Presentation. Klamath-Trinity Project Overview_Mark Hampton.ppt

Goodman, D., M. Harvey, R. Hughes, W. Kimmerer, K. Rose and G. Ruggerone. 2011. Klamath River Expert Panel Final Report, Scientific Assessment of Two Dam Removal Alternatives on Chinook Salmon. June 13, 2011. Klamath Expert Panel_06 13 11.pdf

Hankin, D.G. and E. Logan. 2008. A Preliminary Analysis of Chinook Salmon Coded-Wire Tag Recovery Data from Iron Gate, Trinity River and Cole Rivers Hatcheries, Brood Years 1978-2001. Hoopa Valley Tribal Council and the Arcata Office, U.S. Fish and Wildlife Service. IGHTRH.CWTanalysis D Hankin.pdf

Hankin, D.G. and E. Logan. 2010. A Preliminary Analysis of Chinook Salmon Coded-Wire Tag Recovery Data from Iron Gate, Trinity River and Cole Rivers Hatcheries, Brood Years 1978-2004. Hoopa Valley Tribal Council and the Arcata Office, U.S. Fish and Wildlife Service. IGHTRH.CWTanalysis2010.pdf

Kinziger, A.P., M. Hellmair, and D.G. Hankin. 2008. Genetic structure of Chinook salmon (Oncorhynchus tshawytscha) in the Klamath-Trinity Basin: implications for within-basin genetic stock identification. Produced under Contract Agreement Between the Hoopa Valley Tribal Fisheries Department and the Humboldt State University Sponsored Programs Foundation. Department of Fisheries Biology, Humboldt State University, Arcata, California. December 2008. GSI Klamath Chinook Final Report.pdf

Klamath River Technical Advisory Team. 2003. Klamath River Fall Chinook Salmon Age-Specific Escapement, 2001 Run. March 4, 2003. Klamath River Fall Chinook 2001 Escapement.pdf

Klamath River Technical Advisory Team. 2003. Klamath River Fall Chinook Salmon Age-Specific Escapement, 2002 Run. March 4, 2003. KRTAT.2002.Age.Comp.Rept.4Mar2003.pdf

Klamath River Technical Advisory Team. 2004. Klamath River Fall Chinook Salmon Age-Specific Escapement, 2003 Run. March 1, 2004. KRTAT.2003.Age.Comp.Rept.1Mar2004.pdf

Klamath River Technical Advisory Team. 2005. Ocean Abundance Projections and Prospective Harvest Levels for Klamath River Fall Chinook, 2005 Season. February 23, 2005. KRTAT.2005.Stk.Prj.Rept.23Feb2005.pdf

Klamath River Technical Advisory Team. 2006. Ocean Abundance Projections and Prospective Harvest Levels for Klamath River Fall Chinook, 2006 Season. February 15, 2006. KRTAT.2006.Stk.Prj.Rept.15Feb2006.pdf

Klamath River Technical Advisory Team. 2007. Ocean Abundance Projections and Prospective Harvest Levels for Klamath River Fall Chinook, 2007 Season. February 15, 2007. KRTAT.2007.Stk.Prj.Rept.15Feb2007.pdf

Klamath River Technical Advisory Team. 2008. Ocean Abundance Projections and Prospective Harvest Levels for Klamath River Fall Chinook, 2008 Season. February 25, 2008. KRTAT.2008.Stk.Prj.Rept.25Feb2008.pdf

Klamath River Technical Advisory Team. 2009. Ocean Abundance Projections and Prospective Harvest Levels for Klamath River Fall Chinook, 2009 Season. February 26, 2009. KRTAT_2009_Stk_Prj_Rept_26Feb2009.pdf

Klamath River Technical Advisory Team. 2010. Klamath River Fall Chinook Salmon Age-Specific Escapement, River Harvest, and Run Size Estimates, 2009 Run. February 22, 2010. KRTAT Fall Chin 2009.age.comp.pdf

Klamath River Technical Advisory Team. 2010. Ocean Abundance Projections and Prospective Harvest Levels for Klamath River Fall Chinook, 2010 Season. March 19, 2010. KRTAT harvest rept.2010.pdf

Klamath River Technical Team. 2005. Klamath River Fall Chinook Salmon Age-Specific Escapement, River Harvest, and Run Size Estimates, 2004 Run. March 6, 2005. krtat_age2004.pdf

Klamath River Technical Team. 2006. Klamath River Fall Chinook Salmon Age-Specific Escapement, River Harvest, and Run Size Estimates, 2005 Run. February 15, 2006. KRTAT.2005.Age.Comp.Rept.15Feb2006.pdf

Klamath River Technical Team. 2007. Klamath River Fall Chinook Salmon Age-Specific Escapement, River Harvest, and Run Size Estimates, 2006 Run. February 1, 2007. KRTAT.2006.Age.Comp.Rept.1Feb2007.pdf

Klamath River Technical Team. 2008. Klamath River Fall Chinook Salmon Age-Specific Escapement, River Harvest, and Run Size Estimates, 2007 Run. February 12, 2008. KRTAT.2007.Age.Comp.Rept.12Feb2008.pdf

Klamath River Technical Team. 2009. Klamath River Fall Chinook Salmon Age-Specific Escapement, River Harvest, and Run Size Estimates, 2008 Run. February 5, 2009. KRTAT.2008.Age.Comp.Rept.4Feb2009.pdf

PFMC. 1994. Technical Appendix to the Klamath River Fall Chinook Review Team Report. Pacific Fishery Management Council, Portland, Oregon. December 1994. Appendix_Klamath FChin Review Team Rept_1994.pdf

PFMC. 2008. Assessment of factors affecting natural area escapement shortfall of Klamath River Fall Chinook salmon in 2004-2006. Pacific Fishery Management Council, Portland, Oregon. February 2008. Klamath chinook limiting factors_2008PFMC.pdf

Prager, M. H. and M.S. Mohr. 1999. Population Dynamics of Klamath River Fall Chinook Salmon: Stock-Recruitment Model and Simulation of Yield under Management. National Marine Fisheries Service, Southwest Fisheries Science Center, Tiburon, California. Prager and Mohr 1999.pdf

Coho

Ackerman, N.K., B. Pyper, I. Courter, and S. Cramer. 2006. Estimation of Returns of Naturally Produced Coho to the Klamath River – Review Draft. Technical Memorandum 1 of 8. Klamath Coho Integrated Modeling Framework Technical Memorandum Series. November 2, 2006. Klamath FChin Review Team Rept_1994.pdf

Beeman, J.W., S. Juhnke, and H.C. Hansel. 2009. Summary of Survival Data from Juvenile Coho Salmon in the Klamath River, Northern California, 2008. Open-File Report 2009-1019. United States Geological Survey, Reston, Virginia. Coho radio-tag Survival 2006-2009ofr20091019.pdf

Beeman, J.W., H. Hansel, S. Juhnke and G. Stutzer. 2009. Summary of Migration and Survival Data from Radio-Tagged Juvenile Coho Salmon in the Trinity River, Northern California, 2008. Open-File Report 2009-1092. United States Geological Survey, Reston, Virginia. Beeman et al 2009.pdf

Beeman, J.W., S. Juhnke, G. Stutzer, and N. Hetrick. 2008. Survival and migration behavior of juvenile coho salmon in the Klamath River relative to discharge at Iron Gate Dam, Northern California, 2007. U.S. Geological Survey, Open-File Report 2008-1332. Juvenile survival ofr20081332.pdf

CDFG. 2002. Report to the Fish and Game Commission: A Status Review of the Coho Salmon (Oncorhynchus kisutch) in North of San Francisco. April 2002. SAL_Coho_StatusNorth_2002.pdf

Corum, R.A. 2010. Middle Klamath Tributary Coho Spawning Survey Report. Middle Klamath Tributary Coho Spawning Surveys 2007-2009 2.doc

Corum, R.A. 2010. Middle Klamath Tributary Coho Spawning Survey Report 2007-2008. U.S. Department of the Interior, Bureau of Reclamation, Klamath River Basin Area Office, Klamath Falls, Oregon. Mid-Klamath Tributary Coho Spawning Surveys 2007-2008 Report.doc

Garza, J.C. Klamath Coho Genetics Data Figures. KlamathCohoFigures (2)_genetics data.pdf

NMFS. 2007. Magnuson-Stevens Reauthorization Act Klamath River Coho Salmon Recovery Plan. Prepared by Rogers, F.R., I.V. Lagomarsino, and J.A. Simondet for the National Marine Fisheries Service, Long Beach, CA. 48pp. MSRA_Klamath Coho Recovery Plan 2007.pdf

Southern Oregon/Northern California Coast Technical Recovery Team (Williams, T., P. Lawson, W. Duffy, D. Hillemeier, G. Kautsky, T. Lisle, M. McCain, M. Rode). 2008. Framework for Assessing Viability of Threatened Coho Salmon in the Southern Oregon/Northern California Coast Evolutionarily Significant Unit. NOAA-TM-NMFS-SWFSC-432. December 2008. TRT_Southern OR_Northern CA Coast ESU_Dec2008.pdf

West Coast Coho Salmon Biological Review Team. 1997. Status Review Update for Coho Salmon from the Oregon and Northern California Coasts. Status Review Update for Coho from OR and No CA coasts – NOAA 1997.pdf

Williams, T.H., E.P. Bjorkstedt, W.G. Duffy, D. Hillemeier, G. Kautsky, T.E. Lisle, M. McCain, M. Rode, R.G. Szerlong, R.S. Schick, M.N. Goslin, and A. Agrawal. 2006. Historical Population Structure of Coho Salmon in the Southern Oregon/Northern California Coasts Evolutionarily Significant Unit. NOAA-TM-NMFS-SWFSC-390. NoCal CohoPops.pdf

Steelhead

Cramer & Associates, Inc. 1995. The Status of Steelhead Populations in California in Regards to the Endangered Species Act. Special Report Submitted to National Marine Fisheries Service on behalf of Association of California Water Agencies. February 1995. Klamath Steelhead status 1995.pdf

Hodge, B. 2010. Life History Variation in Oncorhynchus mykiss from the Lower Klamath River Basin. Masters Thesis, Humboldt State University. B.Hodge_Thesis_Final.pdf

Israel, J.A. 2003. Life History, Ecology, and Status of Klamath River Steelhead. Klamath Steelhead Life History Josh_Israel.pdf

Kesner, W.D. and R.A. Barnhart. 1972. Characteristics of the Fall-Run Steelhead Trout (Salmo gairdneri gairdneri) of the Klamath River System With Emphasis on the Half-Pounder. California Cooperative Fishery Unit, Humboldt State College, Arcata, California. Calif. Fish and Game. 58(3): 204-220. Kesner and Barnhardt 1972.pdf

Klamath Steelhead Harvest, 2006-2008. Unpublished Data. Excel File. Klamath06to08 Steelhead harvest.xls

Lee, D.P. 1984. Draft Klamath River Steelhead Studies 1977 through 1983. Prepared by the California Department of Fish and Game under Contract with the U.S. Department of Interior, Bureau of Reclamation. July 1984. Klamath Steelhead status 1995.pdf

Pearse, D.E., S.L. Gunckel, and S.E. Jacobs. Population structure and genetic divergence of rainbow and redband trout (Oncorhynchus mykiss) in the upper Klamath Basin. Draft material for HSRG use only. UpperKlamath_Final.pdf

Iron Gate Hatchery

CDFG. 2010. Iron Gate Hatchery Site Safety Plan. California Department of Fish and Game.

Contents – CDFG Template Safety Plan Table of Contents.doc

CDFG. 2010. Iron Gate Hatchery Production Goals and Constraints. California Department of Fish and Game, Northern Region, Redding California. November 2010. Iron Gate Hatchery Production Goals and Constraints.pdf

CDFG. 2010. Health Assessment, Disease Certification and Disease Diagnostic Defined. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. June 15, 2010. Health assessment, Disease Certification & Disease Diagnostic Defined.pdf

CDFG. 2010. Fish health certification results for Iron Gate Fish Hatchery 2009 – Spring 2010. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. IGH certification 2009-2010.pdf

CDFG. 2011. Hatchery and Genetic Management Plan for Iron Gate Hatchery. Prepared for the National Oceanic and Atmospheric Administration, National Marine Fisheries Service, Arcata, California. IGH HGMP Version 4.0 Final Feb 4 2011.doc

Chesney, D. 2009. Recovery of Fall-run Chinook and Coho Salmon at Iron Gate Hatchery, 2008. California Department of Fish and Wildlife, Klamath River Project, Yreka, California. IGH 2008 final Report.pdf

IGH. 2010. Iron Gate Hatchery Fish Releases 1991-2010. IGH Fish Releases 1991 to 2009.doc

IGH. 2010. Iron Gate Hatchery Fish Releases 1991-2010, dates and size. Iron Gate Hatchery Fish Releases, dates size.doc

Logan, E. and D. Hankin. 2008. A Detailed Review of the Annual Hatchery Production Cycle at Iron Gate Hatchery: With Recommendations for Small Changes in Hatchery Practices that would Reduce Rearing Mortalities and Improve Accuracy of Inventories and Estimated Numbers of Fish Released. Produced for: Hoopa Valley Tribal Council, Humbolt State University Sponsored Programs Foundation, and U.W. Bureau of Reclamation. January 2008. PDF document – Logan and Hankin – IGH Report 2008.dgh.pdf

Word document – Logan and hankin IGH Report 18June2007.jeldgh.doc

Annual Reports

CDFG. 2003. Chinook and Coho Salmon Recovery at Iron Gate Hatchery, October 7, 2002 to January 3, 2003. California Department of Fish and Game, Klamath River Project. IGH 2002 Final Report v3.pdf

Chesney, D. 2007. Recovery of Fall-run Chinook and Coho Salmon at Iron Gate Hatchery 2006. California Department of Fish and Game, Klamath River Project. IGH 2006 revised final 12_2007.pdf

Chesney, D. 2008. Recovery of Fall-run Chinook and Coho Salmon at Iron Gate Hatchery 2007. California Department of Fish and Game, Klamath River Project. IGH 2007 Final Report.pdf

Chesney, D. 2009. Recovery of Fall-run Chinook and Coho Salmon at Iron Gate Hatchery 2008. California Department of Fish and Game, Klamath River Project. IGH 2008 final Report.pdf

Chesney, D. and M. Knechtle. 2010. Recovery of Fall-run Chinook and Coho Salmon at Iron Gate Hatchery, September 25, 2009 to December 15, 2009. California Department of Fish and Game, Klamath River Project. IGH 2009 draft Report_2.pdf

Hampton, M. 2005. Recovery of Chinook and Coho Salmon at Iron Gate Hatchery, October 4, 2004 to December 20, 2004. California Department of Fish and Game, Klamath River Project. IGH 2004 Final Report.pdf

Richey, J. 2006. Recovery of Fall-run Chinook and Coho Salmon at Iron Gate Hatchery 2005. California Department of Fish and Game, Klamath River Project. IGH 2005 Final Report.pdf

Richey, J. 2007. Recovery of Fall-run Chinook and Coho Salmon at Iron Gate Hatchery, October 6, 2003 to December 31, 2003. California Department of Fish and Game, Klamath River Project. IGH 2003 Final Report v4 12_2007.pdf

Rushton, K.W. 2000. Annual Report: Iron Gate Hatchery, 1999-2000. California Department of Fish and Game, Northern California-North Coast Region. IGH 1999 2000.doc

Rushton, K.W. 2001. Annual Report: Iron Gate Hatchery, 2000-2001. California Department of Fish and Game, Northern California-North Coast Region. 2000-2001.doc

Rushton, K.W. 2002. Annual Report: Iron Gate Hatchery, 2001-2002. California Department of Fish and Game, Northern California-North Coast Region. 2001-2002.doc

Rushton, K.W. 2003. Annual Report: Iron Gate Hatchery, 2002-2003. California Department of Fish and Game, Northern California-North Coast Region. 2002-2003.doc

Rushton, K.W. 2004. Annual Report: Iron Gate Hatchery, 2003-2004. California Department of Fish and Game, Northern California-North Coast Region. 2003-2004.doc

Rushton, K.W. 2005. Annual Report: Iron Gate Hatchery, 2004-2005. California Department of Fish and Game, Northern California-North Coast Region. IGH annual report 2004-2005.doc

Rushton, K.W. 2006. Annual Report: Iron Gate Hatchery, 2005-2006. California Department of Fish and Game, Northern California-North Coast Region. IGH annual report 2005-2006.doc

Rushton, K.W. 2007. Annual Report: Iron Gate Hatchery, 2006-2007. California Department of Fish and Game, Northern California-North Coast Region. IGH annual report 2006-2007.doc

Rushton, K.W. 2008. Annual Report: Iron Gate Hatchery, 2007-2008. California Department of Fish and Game, Northern California-North Coast Region. IGH annual report 2007-2008.doc

Rushton, K.W. 2009. Annual Report: Iron Gate Hatchery, 2008-2009. California Department of Fish and Game, Northern California-North Coast Region. IGH annual report 2008-2009.doc

Coho salmon

CDFG. 2007. Fish Pathologist Report – Annual Disease Certification, Iron Gate Hatchery Coho, January 24, 2007. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. IGH coho certification 1-24-07.pdf

CDFG. 2010. Fish Pathologist Report – Iron Gate Hatchery Coho yearlings (April releases), February 24, 2010. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. IGH coho 2-24-10.pdf

CDFG. 2009. Iron Gate Hatchery Quality Control/Length Frequencies, Coho. California Department of Fish and Game. February 24, 2009. Coho QC1-022409.pdf

CDFG. 2009. Iron Gate Hatchery Quality Control/Length Frequencies, Coho – 2. California Department of Fish and Game. February 24, 2009. Coho QC2-022409.pdf

CDFG. 2010. Iron Gate Hatchery Quality Control/Length Frequencies, Coho. California Department of Fish and Game. February 16, 2010. Coho QC1-021610.pdf

CDFG. 2010. Iron Gate Hatchery Quality Control/Length Frequencies, Coho – 2. California Department of Fish and Game. February 16, 2010. Coho QC2-021610.pdf

CDFG. 2010. Iron Gate Hatchery Quality Control/Length Frequencies, Coho – 3. California Department of Fish and Game. February 16, 2010. Coho QC3-021610.pdf

CDFG. 2011. Iron Gate Hatchery Quality Control/Length Frequencies, Coho. California Department of Fish and Game. February 3, 2011. Coho QC1-020311.pdf

CDFG. 2011. Iron Gate Hatchery Quality Control/Length Frequencies, Coho – 2. California Department of Fish and Game. February 3, 2011. Coho QC2-020311.pdf

CDFG. 2011. Iron Gate Hatchery Quality Control/Length Frequencies, Coho – 3. California Department of Fish and Game. February 3, 2011. Coho QC3-020311.pdf

Steelhead

CDFG. 2005. Fish Pathologist Report – Iron Gate Hatchery Steelhead fry, June 20, 2005. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. SH-06-20-05.pdf

CDFG. 2005. Veterinary Prescription – Iron Gate Hatchery Steelhead fry, June 20, 2005. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. SH-06-20-05, perscription.pdf

CDFG. 2006. Fish Pathologist Report – Iron Gate Hatchery Steelhead fry, July 18, 2006. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. SH-07-18-06.pdf

CDFG. 2007. Fish Pathologist Report – Iron Gate Hatchery Klamath River Steelhead fry, June 8, 2007. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. SH-06-08-07.pdf

CDFG. 2007. Fish Pathologist Report – Iron Gate Hatchery Yearling Steelhead, March 7, 2007. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. IGH SH 3-7-07.pdf

CDFG. 2007. Fish Pathologist Report – Annual Disease Certification, Iron Gate Hatchery Steelhead, January 23, 2007. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. IGH steelhead certification 1-23-07pdf.pdf

CDFG. 2008. Fish Pathologist Report – Iron Gate Hatchery Steelhead, October 27, 2008. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. SH-10-27-08.pdf

CDFG. 2009. Fish Pathologist Report – Iron Gate Hatchery Steelhead fry, June 9, 2009. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. SH-06-09-09.pdf

CDFG. 2009. Fish Pathologist Report – Iron Gate Hatchery, Steelhead Yearlings (April release), April 14, 2009. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. IGH SH 4-14-09.pdf

CDFG. 2009. Iron Gate Hatchery Quality Control/Length Frequencies, Steelhead. California Department of Fish and Game. March 19, 2009. SH QC1-031909.pdf

CDFG. 2009. Iron Gate Hatchery Quality Control/Length Frequencies, Steelhead – 2. California Department of Fish and Game. March 19, 2009. SH QC2-031909.pdf

CDFG. 2010. Fish Pathologist Report – Iron Gate Hatchery, Steelhead Yearlings (April release), February 24, 2010. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. IGH SH 2-24-10.pdf

CDFG. 2010. Iron Gate Hatchery Quality Control/Length Frequencies, Steelhead. California Department of Fish and Game. March 3, 2010. SH QC1-030310.pdf

CDFG. 2010. Iron Gate Hatchery Quality Control/Length Frequencies, Steelhead – 2. California Department of Fish and Game. March 3, 2010. SH QC2-030310.pdf

CDFG. 2010. Iron Gate Hatchery Quality Control/Length Frequencies, Steelhead – 3. California Department of Fish and Game. March 3, 2010. SH QC3-030310.pdf

CDFG. 2010. Fish Pathologist Report – Iron Gate Hatchery Steelhead fry, May 21, 2010. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. SH-05-21-2010.pdf

CDFG. 2010. Fish Pathologist Report – Iron Gate Hatchery Steelhead fry, June 16, 2010. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. SH-06-16-10.pdf

CDFG. 2011. Iron Gate Hatchery Quality Control/Length Frequencies, Steelhead. California Department of Fish and Game. February 11, 2011. SH QC1-021111.pdf

CDFG. 2011. Iron Gate Hatchery Quality Control/Length Frequencies, Steelhead – 2. California Department of Fish and Game. February 11, 2011. SH QC2 021111.pdf

CDFG. 2011. Iron Gate Hatchery Quality Control/Length Frequencies, Steelhead – 3. California Department of Fish and Game. February 11, 2011. SH QC3-021111.pdf

Chesney, W.R. 2003. 2001-2002 Annual Report – Iron Gate Hatchery Steelhead Residualism Study – Project 2b-1. California Department of Fish and Game, Steelhead Research and Monitoring Program. March 2003. chesney_2003_ighresidualism.pdf

Chesney, W.R. 2007. IGH Residualism Studies. Draft Testimony RE: FERC 2082. IGH Residualism testimony draft 8-9-1900.pdf

IGH. 2011. Steelhead returns and females spawned at Iron Gate Hatchery, 2003-2010. IGH Steelhead returns & females spawned 2003 to 2010.doc

IGH. 2010. Iron Gate Hatchery Steelhead Returns 1998-2009 Fin-Clip Numbers. pNOB IGH Steelhead Returns-Fin Clip Numbers through 2010.xls

Fall Chinook salmon

CDFG. 2006. Fish Pathologist Report – Iron Gate Hatchery Chinook salmon, May 17, 2006. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. IGH Pathology Chinook 5-17-06.pdf

CDFG. 2006. Fish Pathologist Report – Annual Disease Certification, Iron Gate Hatchery, November 11, 2006. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. IGH Pathology chinook certification 1-11-06.pdf

CDFG. 2008. Fish Pathologist Report – Iron Gate Hatchery Fall-Run Chinook, April 29, 2008. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. IGH Pathology Chinnok 4-29-08.pdf

CDFG. 2009. Fish Pathologist Report – Iron Gate Hatchery Chinook smolts, May 18, 2009. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. IGH pathology Chinook 5-18-09.pdf

CDFG. 2009. Fish Pathologist Report – Iron Gate Hatchery Fall-Run Chinook yearlings, October 13, 2009. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. IGH pathology Chinook 10-13-09.pdf

CDFG. 2010. Fish Pathologist Report – Iron Gate Hatchery Fall-Run Chinook (June release), June 16, 2010. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. IGH Pathology Chinook 6-16-10.pdf

CDFG. 2010. Fish Pathologist Report – Iron Gate Hatchery Fall Chinook yearlings, October 20, 2010. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. IGH Pathology Chinook 10-20-10.pdf

CDFG. 2010. Summary of Field Data Collection Efforts for Fall-Run Chinook Salmon at Iron Gate Hatchery During the 2010 Season. California Department of Fish and Game, Klamath River Project, Yreka, California. Age Comp Summary of IGH Data Collection Efforts 2010.doc

IGH. 2009. Summary of Chinook Salmon Runs 1962-2009. Word Document. IGH Chinook Fish Runs 1962 to 2009.doc

IGH. Total IGH Chinook Salmon CWT Recoveries and Contribution Rates. Excel File. Total IGH Contributions_distribute_2010.xls

IGH Chinook Spawning Tables by Date – 2006-2010. Excel File. IGH_KS_spwn_06_10.xls

IGH Chinook Strays. Excel File. IGH Strays.xls

Percent of IGH Fall Chinook Adult Returns of Hatchery Origin, 1987-2009. Excel File. IGH_percent_cwt_1987_2009 Hatchery Origin analysis PNOB.xls

Trinity River Hatchery

CDFG. 1979. Letter from Fullerton documenting escapement goals for Trinity Hatchery. 1-22-79 Fullerton Letter.pdf

Moffett, J.W and S.E. Smith. 1950. Biological Investigations of the Fishery Resources of Trinity River, California. Special Scientific Report: Fisheries No. 12. United States Department of the Interior, Fish and Wildlife Service, Washington, D.C. February 1950. Moffett and Smith 1950.pdf

Summary of Trinity River Salmon and Steelhead Hatchery Authorization and Production Goals. draft TRH Authorization Summary.pdf

US Department of the Interior. 2000. Record of Decision Trinity River Mainstem Fishery Restoration Final Environmental Impact Statement/Environmental Impact Report. December 2000. Trinity_ROD_2000.pdf

USFWS and CDFG. 1956. A plan for the protection and maintenance of fish and wildlife resources affected by the Trinity River Division, Central Valley Project. United States Fish and Wildlife Service and the California Department of Fish and Game. November 1956. TRD 1956 Report part 1.pdf

USFWS, USBR, Hoopa Valley Tribe & Trinity County. 2000. Trinity River Mainstem Fishery Restoration. Final Environmental Impact Statement/Report. October 2000.

Contents – FEIS_contents.pdf

USFWS, USBR, Hoopa Valley Tribe & Trinity County. 2000. Trinity River Mainstem Fishery Restoration. Draft Environmental Impact Statement/Report. October 1999. Contents – DEIS_contents.pdf

Zajanc, D. and D. Hankin. 1998. A Detailed Review of the Annual Hatchery Production Cycle at Trinity River Hatchery: With Recommendations for Changes in Hatchery Practices that would Improve Representativeness of Marking and Accuracy of Estimation of Numbers Released. September 2008. Zajanc.Hankin.TRH.1998.pdf

Annual Reports

Marshall, L.E. Jr. 2004. Annual Report: Trinity River Salmon and Steelhead Hatchery, 2003-2004. California Department of Fish and Game, North Coast, Northern California Region. anrpt04.doc

Marshall, L.E. Jr. 2005. Annual Report: Trinity River Salmon and Steelhead Hatchery, 2004-2005. California Department of Fish and Game, North Coast, Northern California Region. anrpt05.doc

Marshall, L.E. Jr. 2006. Annual Report: Trinity River Salmon and Steelhead Hatchery, 2005-2006. California Department of Fish and Game, North Coast, Northern California Region. anrpt06.doc

Marshall, L.E. Jr. 2007. Annual Report: Trinity River Salmon and Steelhead Hatchery, 2006-2007. California Department of Fish and Game, North Coast, Northern California Region. anrpt07.doc

Marshall, L.E. Jr. 2008. Annual Report: Trinity River Salmon and Steelhead Hatchery, 2007-2008. California Department of Fish and Game, North Coast, Northern California Region. anrpt08.doc

Marshall, L.E. Jr. 2009. Annual Report: Trinity River Salmon and Steelhead Hatchery, 2008-2009. California Department of Fish and Game, North Coast, Northern California Region. anrpt09.doc

Marshall, L.E. Jr. 2010. Annual Report: Trinity River Salmon and Steelhead Hatchery, 2009-2010. California Department of Fish and Game, North Coast, Northern California Region. anrpt10.doc

Ramsden, G.R. 2001. Annual Report: Trinity River Salmon and Steelhead Hatchery, 2000-2001. California Department of Fish and Game, North Coast, Northern California Region. anrpt01.doc

Ramsden, G.R. 2002. Annual Report: Trinity River Salmon and Steelhead Hatchery, 2001-2002. California Department of Fish and Game, North Coast, Northern California Region. anrpt02.doc

Ramsden, G.R. 2003. Annual Report: Trinity River Salmon and Steelhead Hatchery, 2002-2003. California Department of Fish and Game, North Coast, Northern California Region. anrpt03.doc

Coho salmon

CDFG. 2009. Fish Pathologist Report – Trinity River Hatchery, Coho salmon, March 13, 2009. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California.

Excel File – Trinity 2009 Health Assessment Coho Yearlings 3-13-9.xls

Word Doc. – Trinity 2009 Health Assessment Coho Yearlings 3-13-9.doc

CDFG. 2010. Fish Pathologist Report – Trinity River Hatchery, Coho yearlings, March release, February 23, 2010. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California.

Word Doc – Trinity 2010 Health Assessement Coho Yearlings.doc

Excel File – Trinity 2010 Health Assessment Coho Yearlings .xls

CDFG. 2007. Fish Pathologist Report – Annual Disease Certification, Trinity River Hatchery, Coho salmon, March 6, 2007. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. Trinity coho March 2007.doc

CDFG. 2008. Fish Pathologist Report – Trinity River Hatchery, Coho fingerlings, September 30, 2008. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. Trinity 2008 Health Assessment Coho Fingerlings.pdf

CDFG. 2011. Fish Pathologist Report – Trinity River Hatchery, Coho yearlings, March 9, 2011. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. Trinity 2011 Health Assessment Coho yearlings.pdf

Naman, Seth. 2011. Text on Trinity River Hatchery coho salmon Broodstock. February 2011. Text on Trinity River Hatchery coho salmon broodstock.docx

Naman, Seth and W. Sinnen. 2010. Methods Used to Determine the Appropriate Level of Production for Coho Salmon at Trinity River Hatchery, California (Presentation). 2010 Cal-Neva presentation.ppt

Naman, Seth, L. Preston, N. Hemphill, W. Sinnen and J. Polos. 2009. Recommendations to the Trinity River Hatchery Ad Hoc Review Committee for management of coho salmon. November 2009. TRH TAG Reccomendations.pdf

Naturally and Trinity River Hatchery-produced coho salmon run-size, in-river angler harvest and spawner escapement estimates for the Trinity River upstream of Willow Creek weir for 1997-2008. t3_App2_08.xls

Run-size, harvest and spawner escapement estimates for right maxillary clipped, Trinity River Hatchery-produced coho salmon returning to the Trinity River, upstream of Willow Creek weir, brood years 1994-2005. T3_app1_08.xls

U.S. Bureau of Reclamation. 2009. Hatchery and Genetic Management Plan for the Trinity River Hatchery. Central Valley Project – Trinity River Division, California, Mid-Pacific Region. United States Department of the Interior, Bureau of Reclamation. Trinity Hatchery Coho HGMP June 8 2009.doc.docx

Steelhead

CDFG. 2007. Fish Pathologist Report – Annual Disease Certification, Trinity River Hatchery, Steelhead, March 7, 2007. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. Trinity SH March 2007.doc

Quinn, S. and K. DeJuilio. 2011. Preliminary Results of the Trinity River Hatchery Adult Steelhead Straying Assessment. Memo from Yurok Tribal Fisheries Division to Hatchery Science Review Panel. May 12, 2011. Steelhead Straying Memo.docx

Trinity River Hatchery Steelhead Release Size & HP Tendency and Return Graphs. Received from David Hankin. TRHSteelheaReleaseSizes&HPTendency&Returns.docx

Spring Chinook salmon

CDFG. 2007. Fish Pathologist Report – Trinity River Hatchery, Spring Chinook fingerlings (October release), September 29, 2007. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California.

Excel File – Trinity 2007 Health Assessment Spring Run Chinook Yearlings9-27-7.xls

Word Doc – Trinity 2007 Health Assessment Spring Run Chinook Yearlings9-27-7.doc

CDFG. 2008. Fish Pathologist Report – Trinity River Hatchery, Spring-Run Chinook, September 30, 2008. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California.

Word Doc – Trinity 2008 Health Assessment Spring Chinook Yearlings 9-30-8.doc

Excel File – Trinity 2008 Health Assessment Spring Chinook Yearlings 9-30-8.xls

CDFG. 2009. Fish Pathologist Report – Trinity River Hatchery, Spring-Run Chinook, September 16, 2009. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California.

Word Doc – Trinity 2009Health Assessment Spring Chinook Yearlings 9-16-9.doc

Excel File – Trinity 2009 Health Assessment Spring Chinook Yearlings 9-16-9.xls

Fall Chinook salmon

CDFG. 2008. Fish Pathologist Report – Trinity River Hatchery, Fall-Run Chinook, September 30, 2008. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. Word Doc – Trinity 2008 Health Assessment Fall Chinook Yearlings9-30-8.doc

Excel File – Trinity 2008 Health Assessment Fall Chinook Yearlings 9-30-8.xls

CDFG. 2009. Fish Pathologist Report – Trinity River Hatchery, Fall-Run Chinook, September 21, 2009. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. Word Doc – Trinity 2009 Health Assessment Fall Chinook Yearlings 9-21-9.doc

Excel File – Trinity 2009 Health Assessment Fall Chinook Yearlings 9-21-9.xls

CDFG. 2011. Fish Pathologist Report – Trinity River Hatchery, Fall-Run Chinook, Fingerlings, June Release, June 2, 2011. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. Trinity 2011 Health Assessment Fall Chinook fingerlings June Release.pdf

Chamberlain, C.D., W. Peterson, and B. Matilton. 2011. Temporal and Spatial Distribution of Chinook Salmon Redds in the Mainstem Trinity River 2002 to 2010. March 2011 Draft. Redds 2010Rep2011.03.08.docx

Lindke, K. Evaluation of Whether Size at Release of Trinity River Hatchery Fall Chinook Affects Survival Rates. Unpublished Memo. Length at Release Results.docx

Bogus

CDFG. 1997. Final Report – California Department of Fish and Game Bogus weir operation, spawning surveys, sport harvest estimate, and monitoring of Iron Gat Hatchery returns, October 15, 1996-September 30, 1997. Project Number 96-FP-12. California Department of Fish and Game. Bogus Cr_1996-FP-12-CDFG.pdf

CDFG. 2001. Bogus Creek Salmon Studies October 1, 1999 – September 30, 2000. Project Number 2000-FP-15. California Department of Fish and Game, Klamath River Project. Bogus Cr_2001-FP-05-BogusCk.pdf

CDFG. 2001. Bogus Creek Salmon Studies October 1, 2000 – September 30, 2001. Project Number 2000-FP-05. California Department of Fish and Game, Klamath River Project. Bogus Cr_2001-FP-05-BogusCk.pdf

CDFG. 2002. Bogus Creek Salmon Studies October 1, 2001 – September 30, 2002. Project Number 2002-FP-01. California Department of Fish and Game, Klamath River Project. 01_Bog_rpt final.pdf

Hampton, M. 2005. Bogus Creek Salmon Studies 2004. California Department of Fish and Game, Northern California-North Coast Region, Klamath River Project, Yreka, California Bogus2004 final report.pdf

Hampton, M. 2006. Bogus Creek Salmon Studies 2005. California Department of Fish and Game, Northern California-North Coast Region, Klamath River Project, Yreka, California. Bogus2005 Final report.pdf

Hampton, M. 2007. Bogus Creek Salmon Studies 2006. California Department of Fish and Game, Northern California-North Coast Region, Klamath River Project, Yreka, California. Bogus 2006 Final Report.pdf

Knechtle, M. 2008. Bogus Creek Salmon Studies 2007. California Department of Fish and Game, Northern Region, Klamath River Project, Yreka, California. Bogus 2007 Report Final.pdf

Knechtle, M. 2009. Bogus Creek Salmon Studies 2008. California Department of Fish and Game, Northern Region, Klamath River Project, Yreka, California. Bogus 2008 Final Report_FWS.pdf

Knechtle, M. and D. Chesney. 2010. Bogus Creek Salmon Studies 2009. California Department of Fish and Game, Northern Region, Klamath River Project, Yreka, California. Bogus Creek Salmon Studies_2009_Final.pdf

Richey, J. 2003. Bogus Creek Salmon Studies 2002. California Department of Fish and game, Klamath River Project, Yreka, California. BOGUS 2002 FINAL REPORT.pdf

Richey, J. and M. Hampton. 2004. Bogus Creek Salmon Studies, 2003. California Department of Fish and Game, Northern California-North Coast Region, Klamath River Project, Yreka, California. Bogus2003 final report with appendix.pdf

FERC DEIS Bogus Creek excerpt. Word Document. FERC DIES Bogus Creek.doc

Iron Gate Production in Bogus Creek Excerpt. Word Document. Iron Gate Production From FERC.doc

Lower Klamath Area

Chan, J.R. and M. Longenbaugh. 1994. Progress report for investigations on Blue Creek, FY 1992. Klamath River Basin Fisheries Task Force. Blue Cr salmonid assess_1992.pdf

Gale, D.B., T.R. Hayden, L.S. Harris, H.N. Voight. 1998. Assessment of Anadromous Fish Stocks in Blue Creek, Lower Klamath River, California, 1994-1996. Habitat Assessment and Biological Monitoring Division, Technical Report No. 4. Yurok Tribal Fisheries Program. Blue Cr salmonid assess_Gale_1998_4.pdf

Gilroy, I.B., M. Logenbaugh, and J.C. Polos. 1992. Progress Report for investigations on Blue Creek, FY 1990-91. Klamath River Basin Fisheries Task Force. Blue Cr salmonid assess_1990.pdf

Hopelain, J.S. 2001. Lower Klamath River Angler Creel Census with Emphasis on Upstream Migrating Fall Chinook Salmon, Coho Salmon, and Steelhead During July through October, 1983 through 1987. Inland Fisheries Administrative Report No. 2001-1. California Department of Fish and Game. Hopelain 2001 klamathcreel.pdf

Hopelain, J.S. 1998. Age, Growth, and Life History of Klamath River Basin Steelhead Trout (Oncorhynchus mykiss irideus) as Determined from Scale Analysis. Inland Fisheries Division Administrative Report No. 98-3. California Department of Fish and Game. Hopelain Admin Rpt 98-3.pdf

Lintz, J.D. and S.M. Noble. 1990. Progress report for the investigations on the lower tributaries to the Klamath River, FY 1990. Klamath River Basin Fisheries Task Force. KlamLowTribs_1990-FP-2.22-AFWO.pdf

Lintz, J.D. and T.T. Kisanuki. 1991. Progress report for the investigations on the lower tributaries to the Klamath River, FY 1991. Klamath River Basin Fisheries Task Force. KlamLowTribs_1991-FP-03-AFWO.pdf

Noble, S.M. and J.D. Lintz. 1989. Progress Report for investigations on the Lower Tributaries to the Klamath River, FY 1989. Klamath River Basin Fisheries Task Force. KlamLowTribs_1989-FP-2.22-AFWO.pdf

Stern, G.R. and S.M. Noble. 1990. Progress Report for investigations on Blue Creek, FY 1989. Klamath River Basin Fisheries Task Force. Blue Cr salmonid assess_1989.pdf

Voight, H. and D.R. McCanne. 1999. Assessment of juvenile salmonids populations in two index reaches of McGarvey Creek, a tributary to the lower Klamath River, California. First year of investigations 1998. Yurok Tribal Fisheries Program. Lower Klamath fish distrib_yuroktfp_voight_1999_7.pdf

Voight, H. and D.R. McCanne. 2004. Regional Estimation of Juvenile Coho Abundance in Tributaries to the Lower Klamath River, 2002-2004. Yurok Tribal Fisheries Program. Lower Klamath estimation of juvenile coho – Voight and McCanna – DRAFT.pdf

Salmon River

Hampton, M. and D. Chesney. Salmon River Weir Historic Chinook Data. Excel File. Salmon River Weir Historic Chinook Data.xls

Olson, A.D and O.J. Dix. 1991. Lower Salmon River Sub-basin Fish Habitat Condition and Utilization Assessment. Final Report. USDA Forest Service, Klamath National Forest, Yreka, California. Lower Salmon R_1990-HP-2.41&1990-2.21-KNF.pdf

Salmon River Spring Chinook Salmon Estimates. Excel File Salmon R. Returns.xlsx

Vilkitis, J., K. Jones, S. Kocher. 1994. Population Genetics of Chinook Salmon in the Salmon River System. Salmon R_1992-FP-08-CPSU.pdf

Scott

Borok, S., and M. Hapton. 2004. 2002 Fall Chinook Salmon Run Size in the Scott River, Salmon River and Miscellaneous Tributary Streams of the Mid-Klamath Basin. California Department of Fish and Game, Northern California-North Coast Region, Klamath River Project. ScottSalmonTrib02 Final Report.pdf

Borok, S., M. Hapton, and J. Richey. 2004. 2003 Fall Chinook Salmon Run Size in the Scott River, Salmon River and Miscellaneous Tributary Streams of the Mid-Klamath Basin. California Department of Fish and Game, Northern California-North Coast Region, Klamath River Project. Final ScottSalmonTrib03.pdf

Borok, S., M. Hapton, and J. Richey. 2007. 2004 Fall Chinook Salmon Run Size in the Scott River, Salmon River and Miscellaneous Tributary Streams of the Mid-Klamath Basin. California Department of Fish and Game, Northern California-North Coast Region, Klamath River Project. Final Salm ScottTrib04.pdf

Chesney, W.R. 2000. Shasta and Scott River Juvenile Steelhead Trapping Annual Report Study 3a1. California Department of Fish and Game, Steelhead Research and Monitoring Program. Scott_2003-JITW-01-SRCD.pdf

Hampton, M. and D. Chesney. Scott Weir Historic Chinook Data. Excel File. Scott Weir Historic Chinook Data.xls

Knectle, M. 2008. Scott River Salmon Studies, 2008. California Department of Fish and Game, Northern Region, Klamath River Project, Yreka, California. Scott 2008 Final Report.pdf

Knectle, M. and D. Chesney. 2009. Scott River Salmon Studies. California Department of Fish and Game, Northern Region, Klamath River Project, Yreka, California. Scott 2009 DRAFT Report.pdf

Quigley, D. 2005. Scott River Watershed Adult Coho Spawning Ground Surveys, November 2004-January 2005. Prepared by the Siskiyou Resource Conservation District. For United States Fish and Wildlife Service (Agreement #113333J027) and California Department of Fish and Game (Agreement #P0310331). May 31, 2005. Scott_2003-Fisheries-FP-01-SRCD.pdf

Scott Steelhead Data. Excel File. Scott_SH_07-10.xls

Shasta and Scott Rivers Watershed-Wide Permitting Programs – FEIR – http://www.dfg.ca.gov/regions/1/ShastaScott/

Shasta

CDFG. 2002. Summary of Chinook and Coho Salmon Observations in 2001, Shasta River Fish Counting Facility, Siskiyou County, California. California Department of Fish and Game, Northern Region, Klamath River Project, Yreka, California. shasta summ 01.pdf

CDFG. 2003. Shasta River Fish Counting Facility, Chinook and Coho Salmon Observations in 2002, Siskiyou County, California. California Department of Fish and Game, Northern Region, Klamath River Project, Yreka, California. shasta 02 final.pdf

CDFG. 2003. Shasta River Fish Counting Facility, Chinook and Coho Salmon Observations in 2002, Siskiyou County, California. California Department of Fish and Game, Northern Region, Klamath River Project, Yreka, California. shasta 02 final.pdf

Chesney, D. 2009. Shasta River Fish Counting Facility, Chinook and Coho Salmon Observations in 2008-2009, Siskiyou County, California. California Department of Fish and Game, Northern Region, Klamath River Project, Yreka, California. Shasta 2008 final Rept.pdf

Chesney, D. and M. Knechtle. 2009. Shasta River Fish Counting Facility, Chinook and Coho Salmon Observations in 2007-2008, Siskiyou County, California. California Department of Fish and Game, Northern Region, Klamath River Project, Yreka, California. Shasta Final Rept_ 07.pdf

Chesney, D. and M. Knechtle. 2010. Shasta River Chinook and Coho Salmon Observations in 2009-2010 Siskiyou County, CA. California Department of Fish and Game, Klamath River Project, Yreka, California. Shasta Coho and Chinook -2009.pdf

Chesney, W.R., W.B. Crombie, S. Daniels, A. Debrick, C. Diviney, H.D. Langendorf, and K. Underwood. 2010. Final Report Shasta and Scott River Juvenile Salmonid Outmigration Monitoring Project P0610354. Anadromous Fisheries Resource Assessment and Monitoring Program. September 2010. SHASTA and scott.pdf

Great Northern Corporation. 1996. Shasta River Remote Water Quality and Flow Monitoring Station #94-HP-08. Final Report. #14-48-0001-94538. 1994-HP-08-GNC.pdf

Hampton, M. 2004. Shasta River Fish Counting Facility, Chinook and Coho Salmon Observations in 2003, Siskiyou County, California. California Department of Fish and Game, Northern Region, Klamath River Project, Yreka, California. shasta 03 final report.pdf

Hampton, M. 2005. Shasta River Fish Counting Facility, Chinook and Coho Salmon Observations in 2004, Siskiyou County, California. California Department of Fish and Game, Northern Region, Klamath River Project, Yreka, California. shasta 04 final report.pdf

Hampton, M. 2006. Shasta River Fish Counting Facility, Chinook and Coho Salmon Observations in 2005, Siskiyou County, California. California Department of Fish and Game, Northern Region, Klamath River Project, Yreka, California. shasta 05 final Report.pdf

Shasta Coho Data. 2001-2010. Shasta Data.xls

Shasta and Scott Rivers Watershed-Wide Permitting Programs – FEIR – http://www.dfg.ca.gov/regions/1/ShastaScott/

Shasta Rack Returns 1935 to present. Excel File. SHR34_80.xls

Shasta Steelhead Counts 2001-2010. Excel File Shasta_SHcounts.xls

Walsh, B. and M. Hampton. 2007. Shasta River Fish Counting Facility, Chinook and Coho Salmon Observations in 2006, Siskiyou County, California. California Department of Fish and Game, Northern Region, Klamath River Project, Yreka, California. Shasta Final Report 06.pdf

Trinity River

Camp Creek DSM Database (2007-2010). Excel Files.

2007 – 2007 Camp Creek DSM Database.xlsx

2008 – 2008 Camp Creek DSM Database.xls

2009 – 2009 Camp Creek DSM Database.xls

2010 – 2010 Camp Creek DSM Database.xlsx

Chamberlin, Charles. 2011. Redd Survey. Trinity River Restoration Program Adult Monitoring Evaluation Workshop. October 26-27, 2011.

McBain & Trush, Inc. 2002. Trinity River Restoration Program. Summary of the United States Secretary of the Interior Record of Decision, December 19, 2000. U.S. Bureau of Reclamation. trinity_usbor_mcbaintrush_2002_rodsumbroc.pdf

Orleans and Happy Camp Ranger Districts. USFS. Fall Chinook Totals 1984-2010. Excel File. Totals ORD&HCRD 84-10.xls

Orleans and Happy Camp Ranger Districts. 2002-2010 Presence/Absence surveys for juvenile coho, Chinook and steelhead in mid-Klamath tributaries. Excel File. 2002-10_JUV_Fish_PRES_ABSENCE_Mid-Klamath_Tribs.xlsx

Orleans and Happy Camp Ranger Districts. USFS. Summer Steelhead Totals and Survey Effort 1985-2009. Excel File. Steelhead Totals 85-09.xlsx

Peterson, M. Population Genetics of Trinity River steelhead (Oncorhynchus mykiss). Department of Fisheries Biology, Humboldt State University, Arcata, California. Draft material for HSRP use only. Trinity.River.SH.pdf

Red Cap Creek DSM Database (2007-2010). Excel Files.

2007 – 2007 Red Cap Creek DSM Database.xlsx

2008 – 2008 Red Cap DSM Database.xls

2009 – 2009 Red Cap Creek DSM Database.xls

2010 – 2010 Red Cap Creek DSM Database.xlsx

Sinnen, W., M. Currier, M. Knechtle, and S. Borok. 2006. Annual Report: Trinity River Basin Salmon and Steelhead Monitoring Project, 2004-2005 Season. California Department of Fish and Game, Northern California – North Coast region, Klamath and Trinity River Projects. 04-05_annual_report.pdf

Sinnen, W., P. Garrison, M. Knechtle, and S. Borok. 2008. Annual Report: Trinity River Basin Salmon and Steelhead Monitoring Project, 2005-2006 Season. California Department of Fish and Game, Northern California – North Coast region, Klamath and Trinity River Projects. 2005 ANNUAL REPORT FINAL.pdf

Sinnen, W., P. Garrison, M. Knechtle, A Hill, J. Hileman, and S. Borok. 2009. Annual Report: Trinity River Basin Salmon and Steelhead Monitoring Project, 2006-2007 Season. California Department of Fish and Game, Northern California – North Coast region, Klamath and Trinity River Projects. 2006_TRP_Annual_Report.pdf

Sinnen, W., M.C. Kier, A. Hill, J. Hileman, and S. Borok. 2010. Annual Report: Trinity River Basin Salmon and Steelhead Monitoring Project, 2007-2008 Season. California Department of Fish and Game, Northern California – North Coast region, Klamath and Trinity River Projects. 2007-2008 ANNUAL REPORT Final.pdf

Sinnen, W., A. Hill, J. Hileman, S. Borok, and M.C. Kier. 2010. Annual Report: Trinity River Basin Salmon and Steelhead Monitoring Project, 2008-2009 Season. California Department of Fish and Game, Northern California – North Coast region, Klamath and Trinity River Projects. 2008_ANNUAL_REPORT_Final.pdf

Six Rivers National Forest, Orleans Ranger District. 2002 Downstream Migrant Trap Weekly Catch Summary, Red Cap Creek. 2002RE~1.PDF

Six Rivers National Forest, Orleans Ranger District. 2003 Downstream Migrant Trap Weekly Catch Summary, Red Cap Creek. 2003RE~1.PDF

Trinity River Basin Snorkel Surveys 1978-2009. Summerfish.xls

USFWS, USBR, Hoopa Valley Tribe, and Trinity County. 2004. Trinity River Fishery Restoration. Supplemental Environmental Impact Statement/Environmental Impact Report. Trinity River Fishery SEIS-EIR.pdf

C. Shasta

Cone, J. and J. Bartholomew. Management of Salmon Mortality Caused by Ceratomyxa shasta in the Klamath River System. Oregon State University, Sea Grant Oregon, and National Oceanic and Atmospheric Administration. Grant #NA16RG1039, Project R/RCF-15. KR_Cs_SG flyer.pdf

True, K., J.S. Foott, A. Bolick, S. Benson, and R. Fogerty. 2010. Myxosporean Parasite (Ceratomyxa shasta and Parvicapsula minibicornis) Incidence and Severity in Klamath River Basin Juvenile Chinook Salmon, April-August 2009. U.S. Fish and Wildlife Service, California-Nevada Fish Health Center, Anderson, California. Final KR09 Report May 6 2010.pdf

True, K., A. Bolick, and J.S. Foott. 2010. Myxosporean Parasite (Ceratomyxa Shasta and Parvicapsula minibicornis) Annual prevalence of Infection in Klamath River Basin Juvenile Chinook Salmon, April-August 2010. US Fish and Wildlife Service, California-Nevada Fish Health Center. FY 2010 Investigational Report. 2010 USFWS KRFHMP Final Report MAR31 2011.pdf

Region 2 – Central Valley

Boydstun, L.B. 2001. Ocean Salmon Fishery Management. Fish Bulletin 179: Contributions to the Biology of Central Valley Salmonids. Pp. 183-196. OceanSalmonFisheryMgt.pdf

Brown, R.L. 2001. Contributions to the Biology of Central Valley Salmonids. California Department of Fish and Game, Fish Bulletin 179(1). Brown editor 2001.pdf

CDFG. 2007. Existing Program Summary: Central Valley Salmon and Steelhead Monitoring Programs. Contributors: Interagency Ecological Program Salmonid Escapement Project Work Team and Interagency Ecological Program Juvenile Monitoring Project Work Team. May 2007. CV_Monitoring Programs_2007.pdf

CDFG. 2007. Central Valley Angler Survey Annual Project Performance Report, July 1, 2006 to June 30, 2007. California Department of Fish and Game. Project No. F-119-R.

CDFG. 2008. Annual Project Performance Report: Central Valley Angler Survey. F-119-R. September 30, 2008. SFRA Annual Report F-119-R-3 07_08_FINAL.pdf

SFRA%20Annual%20Project%20Performance%20Report%20F-119-R-2%2006.doc

CDFG. 2009. Anadromous Facilities Plant Summary 2009. Excel File. AnadFacilities_PlantSumm_052909_Revised 060309.xlsx

CDFG. 2009. Annual Project Performance Report: Central Valley Angler Survey. F-119-R. September 30, 2009. F-119-R-4_Final APR_2008-09.pdf

CDFG. 2010. Annual Project Performance Report: Central Valley Angler Survey. F-119-R. September 1, 2010. F-119-R-5 09_10 Final APR.pdf

CDFG. 2011. Draft California Hatchery Review Catch Data, J. Stanford. Excel file. CA hatchery review, catch data jstanford.xlsx

Delta Protection Commission. 2006. 2006-2011 Strategic Plan. Adopted July 27, 2006. Delta ProgtectionCommission 2006.pdf

DWR. 2004. Final Report Evaluation of Potential Effects of Fisheries Management Activities on ESA-Listed Fish Species SP-F5/7 Task 1. Oroville Facilities Relicensing, FERC Project No. 2100. May 2004. DWR 2004.pdf

FERC. 2006. Draft Environmental Impact Statement Oroville Facilities California. FERC Project No. 2100. Federal Energy Regulatory Commission, Office of Energy Project. September 29, 2006. Draft Environmental Impact Statement Oroville Facilities 2006.pdf

Hicks, A.C. 2003. A discussion and analysis of four constant fractional marking alternatives for California”™s Central Valley salmon hatcheries. Masters Thesis, University of Idaho. Hicks 2003 CFM Thesis.pdf

IFC Jones & Stokes. 2008. Butte Slough/Sutter Bypass Fish Passage and Entrainment Assessment. October (ICF J&S 06786.06). Sacramento, CA. Prepared for: Ducks Unlimited, Inc., Rancho Cordova, CA. Butte Creek EDT.pdf

Massa, D.A., and T. Schroyer. 2003. Central Valley Salmon and Steelhead Harvest Monitoring Project 2002 Angler Survey. California Department of Fish and Game, Sacramento Valley & Central Sierra Region. September 2003. 2002 Angler Survey Report.pdf

Murphy, K., T. Schroyer, M. Harris, and D. Massa. 2001. Central Valley Salmon and Steelhead Harvest Monitoring Project 2000 Angler Survey. California Department of Fish and Game. 2000 Sacto River Angler Survey .pdf

Myrick, C.A. and J. Cech. 2001. Temperature Effects on Chinook Salmon and Steelhead: a Review Focusing on California’s Central Valley Populations. Bay-Delta Modeling Forum Technical Publication 01-1, Published electronically by the Bay-Delta Modeling Forum at http://www.sfei.org/modelingforum/ Myrick and Cech 2001.pdf

NMFS. 2007. 2007 Federal Recovery Outline for the Evolutionarily Significant Units of Sacramento River Winter-run Chinook Salmon and Central Valley Spring-run Chinook Salmon and the Distinct Population Segment of California Central Valley Steelhead. 2007_Recovery_Outline_for_CV_ChinSTH_ESUs.pdf

NMFS. 2008. Endangered Species Act Section 7 Consultation: Draft Biological Opinion on the Long-Term Central Valley Project and State Water Project Operations Criteria and Plan. National Marine Fisheries Service, Southwest Region. Central Valley Draft_BiOp_OCAP_.pdf

National Marine Fisheries Service. 2009. Public Draft Recovery Plan for the Evolutionarily Significant Units of Sacramento River Winter”run Chinook Salmon and Central Valley Spring”run Chinook Salmon and the Distinct Population Segment of Central Valley Steelhead. Sacramento Protected Resources Division. October 2009. NOAA_Public_Draft_Recovery_Plan_Sacramento_2009.pdf

Nielsen, J.L, S. Pavey, T. Wiacek, G.K. Sage and I. Williams. 2003. Genetic analyses of Central Valley trout populations 1999-2003. Final Technical Report submitted December 8, 2003. California Department of Fish and Game, Sacramento, California. U.S. Fish and Wildlife Service, Red Bluff Fish and Wildlife Office. Nielsen et al 2003 Central Valley Trout Final revision.doc

NOAA. 2009. Biological Opinion and Conference Opinion on the Long-term operations of the Central Valley Project and State Water Project. National Marine Fisheries Service, Southwest Region. June 4, 2009. NOAA 2009 BO CV.pdf

O”™Farrell, M.R., M.S. Mohr, M.L. Palmer-Zwahlen, and A.M. Grover. 2008. The Sacramento Index. National Marine Fisheries Service, Southwest Fisheries Science Center, Fisheries Ecology Division. California Department of Fish and Game, Marine Region, Ocean Salmon Project. November 2008. Sacramento Index 11_08.pdf

Reynolds, F.L., T.J. Mills, R. Benthin, and A. Low. 1993. Restoring Central Valley Streams: A Plan for Action. California Department of Fish and Game, Inland Fisheries Division. November 1993. Reynolds et al 1967 RestoringCentralVallyStreams.pdf

Reynolds, F.L., R.L. Reavis, and J. Schuler. 1990. Central Valley Salmon and Steelhead Restoration and Enhancement Plan. California Department of Fish and Game, Inland Fisheries Division. Reynolds etal 1990 restoration.pdf

Schroyer, T., D. Massa, and K. Murphy. 2002. Central Valley Salmon and Steelhead Harvest Monitoring Project 2001 Angler Survey. California Department of Fish and Game. December 2002. Central Valley Salmon and Steelhead Harvest Monitoring Project 2001.pdf

Shapovalov L. and A.C. Taft. 1954. The life histories of the steelhead Rainbow trout (Salmo gairdnerii gairdnerii) and Silver salmon (Oncorhynchus kisutch) with special reference to Waddell Creek, California, and recommendations regarding their management. California Department of Fish and Game Fish Bulletin No. 98. 476 p. Shapovalov and Taft 1954.pdf

Smith, C.T., A.R. LaGrange, W.R. Ardren, M.A. Banks, O.P. Jacobson. 2008. Run composition of Chinook salmon at Red Bluff Diversion Dam during gates-in operations: A comparison of phenotypic and genetic assignment to run type. Technical Information Leaflet No. AB-08-01. September 9, 2008. Smith et al. 2008 – RBDD adult genetics report 07-08.pdf

Stillwater Sciences. 2004. Lower Calaveras River Chinook Salmon and Steelhead Limiting Factors Analysis – First Year Report (Revised). Fishery Foundation of California, 9632 Adams Street, Elk Grove, California. September 2004. calaveras chinook and steelhead.pdf

Summary of Chinook and steelhead returns to Central Valley hatcheries. Excel File. Chinook and Steelhead Hatchery Counts 2009-2010.xls

USFWS. 2004. Formal and Early Section 7 Endangered Species Consultation on the Coordinated Operations of the Central Valley Project and State Water Project and the Operational Criteria and Plan. U.S. Fish and Wildlife Service, Sacramento Fish and Wildlife Office, Sacramento, California. OCAP LAR 2004.pdf

U.S. Department of the Interior. 2010. Assessment of anadromous fish production in the Central Valley of California between 1992 and 2009. Report prepared by the U.S. Fish and Wildlife Service and Bureau of Reclamation, Comprehensive Assessment and Monitoring Program. Sacramento, California. 94 pp. 2010_CAMP_annual_report.pdf

USFWS. 2001. Final Restoration Plan for the Anadromous Fish Restoration Program: A Plan to Increase Natural Production of Anadromous Fish in the Central Valley of California. Prepared for the Secretary of the Interior by the United States Fish and Wildlife Service with assistance from the Anadromous Fish Restoration Program Core Group under authority of the Central Valley Project Improvement Act. Released as a Revised Draft May 30, 1997, Adopted as Final on January 9, 2001. AFRP Production Targets.docx

Wixom, L.H., J. Pisciotto, and C. Lake. 1995. Final Performance Report – Inland and Anadromous Sport Fish Management and Research, Sacramento River System Sport Fish Catch Inventory. July 1, 1988 through June 30, 1995. California Department of Fish and Game, Inland Fisheries Division. June 30, 1995. Angler Survey Report Wixom et al. 1995.pdf

Chinook

Allen, S. 2005. ERP Direction Action: Implementation of a Constant Fractional Marking/Tagging Program for Central Valley Hatchery Chinook Salmon. Ecosystem Restoration Program, Prop 50 Bond Funded, Project No. DFG-05####. Allen Constant Fraction Marking Proposal.pdf

Azat, J. 2011. California Central Valley Sacramento and San Joaquin River Systems – Chinook Salmon Escapement – Hatchery and Natural Areas. February 1, 2011. GrandTab 020111.pdf

Bergman, J.M. 2010. Final Contract Product: Existing In-river Adult Chinook Salmon Escapement Monitoring Programs in California”™s Central Valley. California Department of Fish and Game, Central Valley Adult Chinook Salmon Escapement Monitoring Plan, Agreement No. P0685618. Draft_Chinook_Escapement_Existing Programs Report_07-07-10.pdf

Brandes, P. and C. Hanson. 2003. Evaluation of the effects of the operation of the Delta Cross Channel and proposed Through Delta Facility on the survival of yearling Fall-run Chinook salmon migrating through the Central Delta. August 22, 2003. Moke yearling delta survival.pdf

Brandes, P.L. and J.S. McLain. Juvenile Chinook Salmon Abundance, Distribution, and Survival in the Sacramento-San Joaquin Estuary. Fish Bulletin 179: Volume Two. Juv Chin. Abun. in Sac-San Joaquin Estuary.pdf

CDFG. 1998. Report to the Fish and Game Commission: A Status Review of the Spring-Run Chinook Salmon (Oncorhynchus tshawytscha) in the Sacramento River Drainage. Candidate Species Status Report 98-01. June 1998. ChinSpringStatus_SacramentoR_1998.pdf

CDFG. 2004. Sacramento River Spring-run Chinook Salmon 2002-2003 Biennial Report. California Department of Fish and Game, Habitat Conservation Division, Native Anadromous Fish and Watershed Branch. June 2004. Sac Riv Spring CHinook 2003.pdf

CDFG. 2004. Sacramento River Winter-run Chinook Salmon 2002-2003 Biennial Report. California Department of Fish and Game, Habitat Conservation Division, Native Anadromous Fish and Watershed Branch. June 2004. Sac Riv Winter Chin 2003.pdf

CDFG. 2009 CWT Recovery Data from Nimbus Fish Hatchery Real Time Spawning. November 19, 2009. Real time CWT recovery 2009.pdf

CDFG. 2011. CalFish Fisheries Abundance Database: Overview of Available Data, Central Valley Chinook. February 23, 2011. 3ways_CVDataGuide.pdf

Central Valley Technical Recovery Team (Lindley, S., A. Low, D. McEwan, B. MacFarlane, T. Swanson, J. Anderson, B. May, J. Williams, S. Greene, C. Hanson). 2004. Population Structure of Threatened and Endangered Chinook Salmon ESUs in California”™s Central Valley Basin. NOAA-TM-NMFS-SWFSC-360. April 2004. TRT_PopStructure_CentralValley_April2004.pdf

Chinook Production Data Tables. Excel File. Chinookprod_032011v2.xls

Garza, J.C., S.M. Blankenship, C. Lemaire, G. Charrier. Genetic population structure of Chinook salmon (Oncorhynchus tshawytscha) in California”™s Central Valley. Draft Final Report. CVChinDraftFinalReport-Garza.pdf

Grover, A., and B. Kormos. 2006. The 2006 Central Valley Chinook age specific run size estimates. Scale Aging Program, California Department of Fish and Game, Santa Rosa, California. Grover and Kromos 2006CentralValleyChinookAgeSpecificEstima.pdf

Grover, A., and B. Kormos. 2007. The 2007 Central Valley Chinook age specific run size estimates. Scale Aging Program, California Department of Fish and Game, Santa Rosa, California. Grover and Kromos 2007CentralValleyChinookAgeSpecificEstima.pdf

Holbrook, C.M., Perry, R.W., and Adams, N.S. 2009. Distribution and joint fish-tag survival of juvenile Chinook salmon migrating through the Sacramento-San Joaquin River Delta, California, 2008: U.S. Geological Survey Open-File Report 2009-1204, 30 p. 2008-USGS-Fish-Survival-Report.pdf

Kormos, B., M. Palmer-Zwahlen, and A. Low. 2011. Directorate Update: Marine Region – Fisheries Branch, Preliminary 2010 Results for Constant Fractional Marking (CFM) of Central Valley Chinook Salmon. 2011. CWT Recovery Presentation-Director_Final.ppt

Kormos, B., M. Palmer-Zwahlen, and A. Low. 2012. Recovery of Coded-Wire Tags from Chinook Salmon in California”™s Central Valley Escapement and Ocean Harvest in 2010. Fisheries Branch Administrative report 2012-02. California Department of Fish and Game. ALow – CFMReport for 2010.pdf

Mesick, C., D. Marston, and T. Heyne. 2009. Estimating Recruitment for Fall-Run Chinook Salmon Populations in the Stanislaus, Tuolumne, and Merced Rivers. U.S. Fish and Wildlife Service, California Department of Fish and Game. August 26, 2009. Mesick et al SJRB Recruitment Methods 26 August 2009b.pdf

Mesick, C., D. Marston, and T. Heyne. 2010. Estimating the total number of coded-wire-tagged adult fall-run Chinook salmon (Oncorhynchus tshawytscha) in California”™s Central Valley Rivers. U.S. Fish and Wildlife Service, California Department of Fish and Game. April 30, 2010. CWT Recovery Paper 4-30-10.pdf

Newman, K.B., A.C. Hicks and D.G. Hankin. 2004. A marking, tagging and recovery program for Central Valley hatchery Chinook salmon. July 7, 2004. Newman et al. 2004 – CVsalmonCFM.pdf

Newman, K.B. and D.G. Hankin. 2004. Statistical procedures for detecting the CVPIA natural Chinook salmon production doubling goal and determining sustainability of production increases. June 21, 2004. Newman and Hankin 2004 – Statistical Procedures for Detecting the CVPIA Natural.pdf

Vogel, D.A. 2010. Evaluation of Acoustic-Tagged Juvenile Chinook Salmon Movements in the Sacramento-San Joaquin Delta during the 2008 Vernalis Adaptive Management Program. March 2010. 2009-VAMP-Tagged-Salmon-Report.pdf

Yoshiyama, R.M., E.R. Gerstung, F.W. Fisher, and P.B. Moyle. 2001. Historical and present distribution of Chinook salmon in the Central Valley drainage of California. Fish Bulletin 179: Contributions to the Biology of Central Valley Salmonids, Volume One. Yoshiyama Central Valley Chinook.pdf

Yoshiyama, R.M., E.R. Gerstung, F.W. Fisher, and P.B. Moyle. 2000. Chinook Salmon in the California Central Valley: an Assessment. Fisheries. Volume 25, No. 2. Yoshiyama et al. 2000 – Chinook Salmon in the California Central Valley.pdf

Steelhead

CDFG. 2007. California Steelhead Fishing Report-Restoration Card: A Report to the Legislature. California Department of Fish and Game. July 2007. Sport Catch Card report Steelhead.pdf

CDFG. 2009. Central Valley Angler Survey Annual Project Performance Report, July 1, 2008 to June 30, 2009. California Department of Fish and Game. Project No. F-119-R. Titus 2009 CV angler survey.pdf

CDFG. 2010. Central Valley Angler Survey Annual Project Performance Report, July 1, 2009 to June 30, 2010. California Department of Fish and Game. Project No. F-119-R. Titus 2010 CV angler survey.pdf

California Central Valley Steelhead Harvest Impacts Summary. Word Doc. California Central Valley Steelhead_Harvest Impact Summary.doc

Central Valley Hatchery Steelhead Release Data by Brood year. Excel file. Steelhead salvage query_DRS analysis.xlsx

Central Valley Steelhead Life History CV steelhead life history.doc

Central Valley Steelhead Monitoring Plan Maps. CVMapCollection_Steelhead.pdf

Central Valley Steelhead Distinct Population Segment Summary. Word Doc. CV2010 SSHAG Steelhead.doc

Central Valley Steelhead hatchery releases 1998-2010. Excel File. CVhatcherySteelheadReleaseData_Nimbus edits.xlsx

Clemento, A.J. 2006. Subpopulation structure of steelhead trout (Oncorhynchus mykiss) in the Middle Fork Eel River as determined by microsatellite DNA polymorphisms. Masters Thesis, Humboldt State University, Arcata, CA. 56 p. Clemento 2007 Thesis Steelhead Eel River.pdf

Eilers, C.D., J. Bergman, and R. Nielson. 2010. A Comprehensive Monitoring Plan for Steelhead in the California Central Valley. California Department of Fish and Game, Fisheries Branch. Administrative Report Number 2010-2. October 2010. CV Steelhead Monitoring Plan 2010.pdf

Eilers, C.D. 2010. Review of Present Steelhead Monitoring Programs in the California Central Valley. California Department of Fish and Game. Pacific States Marine Fisheries Commission. Fisheries Branch, Administrative Report Number: 2010-1. October 2010. Review of Central Valley Steelhead Monitoring Programs October 2010.pdf

Garza, J.C. and D.E. Pearse. 2008. Population genetic structure of Oncorhynchus mykiss in the California Central Valley. Final report for California Department of Fish and Game. Contract #PO485303. Garza 2008.pdf

Hollock, R.J., W.F. Van Woert, and L. Shapovalov. 1961. An Evaluation of Stocking Hatchery-Reared Steelhead Rainbow Trout (Salmo Gairdnerii Gairdnerii) in the Sacramento River System. California Department of Fish and Game Fish Bulletin No. 114. Hallock et al 1961.pdf

NMFS. California Central Valley Steelhead ESU. Feather River Steelhead.pdf

NMFS. 1998. Endangered and Threatened Species: Threatened Status for Two ESUs of Steelhead in Washington, Oregon, and California. Federal Register 63(53). March 19, 1998. NMFS Central Valley Steelhead Listing Document.pdf

Nielson, J.L. and M.C. Fountain. 1999. Microsatellite diversity in sympatric reproductive ecotypes of Pacific steelhead (Oncorhynchus mykiss) from the Middle Fork Eel River, California. Pacific Southwest Research Station, Hopkins Marine Station, Stanford University, Pacific Grove, California. Nielsen and Fountain 1999.pdf

Nielsen, J.L., S. Pavey, T. Wiacek, G.K. Sage, and I. Williams. 2003. Genetic Analysis of Central Valley Trout Population 1999-2003. December 8, 2003. Nielsen (2003) Central Valley Trout Final Report.doc

Niemela, K. 2007. Productivity of Natural Spawning Hatchery-origin Steelhead in Battle Creek Revealed Through Pedigree Analysis. Interim Project Report presented to the American Fisheries Society. Battle Creek Steelhead Genetics_2007 AFS_Niemela.pdf

Rundio, D.E. and S.T. Lindely. 2007. Terrestrial subsidies to steelhead in Big Sur, California: Seasonal patterns and non-native prey. American Society of Limnology and Oceanography. Aquatic Sciences meeting presentation, Santa Fe, New Mexico. Rundio and Lindely 2007.pdf

Spina, A.P., M.A. Allen, and M. Clarke. 2005. Downstream Migration, Rearing Abundance, and Pool Habitat Associations of Juvenile Steelhead in the Lower Main Stem of a South-Central California Stream. North American Journal of Fisheries Management 25:919-930. Spina_etal_2005.pdf

Steelhead Satellite Project Work Team. 1998. Monitoring, assessment and research on Central Valley Steelhead: Status of Knowledge, Review of Existing Programs, and Assessment of Needs. 25 p. Steelhead Project Work Team 1998.pdf

Zimmerman, C.E., G.E. Edwards and K. Perry. 2008. Maternal origin and migratory history of Oncorhynchus mykiss captured in rivers of the Central Valley, California. Final Report. Contract No. P0385300. March 6, 2008. Zimmerman et al 2008 O.mykiss origin and migration history.pdf

Appendix A. Summary Steelhead Programs in California”™s Central Valley. Word Doc. CV_Steelhead_Existing_Prog_review_APPENDIX_A_summary_tables.doc

Figures on Mokelumne and American rivers Steelhead. Word Doc. Figures on Mok & Am R Steelhead.docx

2001-2004 Steelhead Monitoring and Incidental Take Report for the Central Valley Project and State Water Project Operations Criteria and Plan (CVP/SWP OCAP) Biological Opinion. SteelheadReportToNMFS2001-2004.pdf

Central Valley North (Sacramento Valley)

Butte Creek

Hill, K.A. and J.D. Webber. 1999. Butte Creek Spring-Run Chinook Salmon, Oncorhynchus tshawytscha, juvenile outmigration and life history. Administrative Report No. 99-5. Sacramento Valley and Central Sierra Region, Inland Fisheries, California Department of Fish and Game. Hill 1999 – Butte Creek Chinook.pdf

McReynolds, T.R., C.E. Garman, P.D. Ward and S.L. Plemons. 2006. Butte and Big Chico Creeks spring-run Chinook salmon, Oncorhynchus tshawytscha life history investigation 2004-2005. Administrative Report No. 2006-4. California Department of Fish and Game, Inland Fisheries, Sacramento Valley – Central Sierra Region. McReynolds et al 2006 – Butte Chinook.pdf

Ward, P.D, T.R. McReynolds, and C.E. Garman. 2003. Butte and Big Chico Creeks spring-run Chinook salmon, Oncorhynchus tshawytscha, life history investigation 2001-2002. Administrative Report No. 2007-2. Sacramento Valley – Central Sierra Region, Inland Fisheries, California Department of Fish and Game. Ward et al 2003 – butte creekc hinook.pdf

Ward, P.D., T.R McReynolds, and C.E. Garman. 2004. Butte Creek Spring-Run Chinook Salmon, Oncorhynchus tshawytscha pre-spawn mortality evaluation 2003. California Department of Fish and Game, Inland Fisheries, Sacramento Valley – Central Sierra Region. IF_Admin_Report_2004-5.pdf

Clear Creek

Earley, J.T., D.J. Colby, and M.R. Brown. 2010. Juvenile Salmonid Monitoring in Clear Creek, California, from October 2008 through September 2009. U.S. Fish and Wildlife Service, Red Bluff Fish and Wildlife Office, Red Bluff, California. September 2010. Clear Creek juvenile salmonid monitoring 2009.pdf

Battle Creek

Jones & Stokes. 2005. Battle Creek Salmon and Steelhead Restoration Project final environmental impact statement/environmental impact report. July. (J&S 03035.03.) Sacramento, CA. Prepared for the US Bureau of Reclamation and the California State Water Resources Control Board. Chapter 1-3 – Final EIS-EIR_Vol1_Ch1-3.pdf

US Bureau of Reclamation Mid-Pacific Region. 2008. Record of Decision for Battle Creek Salmon and Steelhead Restoration Project – Final Environmental Impact Statement/Environmental Impact Report. December 2008. Final_EIS-EIR_ROD.pdf

Cosumnes River

Cosumnes River Salmonid Barrier Program Action Report. C1_Granlees.pdf

Snider, B. and B. Reavis. 2000. Cosumnes River Chinook Salmon Spawner Escapement, Rearing and Emigration Surveys 1998-1999. Stream Evaluation Program, Technical Report No. 00-7. California Department of Fish and Game. August 2000. Cos. River Chinook 2000.pdf

Tuolumne River

Ford, T. and S. Kirihara. 2010. Tuolumne River Oncorhynchus mykiss Monitoring Report. Turlock Irrigation District and Modesto Irrigation District. January 2010. OmykissJan2010SummaryRptFinal.pdf

Sonke, C.L., A.N. Fuller, and S.M. Ainsley. 2010. Outmigrant Trapping of Juvenile Salmonids in the Lower Tuolumne River, 2010. Prepared for Turlock Irrigation District and Modesto Irrigation District. Fish Bio, Oakdale, California. December 2010. Tuolumne RST 2010.pdf

Stillwater Sciences. 2011. Tuolumne River 2010 Oncorhynchus mykiss Monitoring Summary Report. Final. Turlock Irrigation District, Modesto Irrigation District. January 2011. Omykiss2010 Summary.pdf

Stanislaus River

Guignard, J. 2004. Stanislaus River Fall Chinook Salmon Escapement Survey 2003. California Department of Fish and Game. March 2004. 2003_Stan_Escapement_Final.pdf

Guignard, J. 2005. Stanislaus River Fall Chinook Salmon Escapement Survey 2004. California Department of Fish and Game. March 2005. 2004_DFG_Stanislaus_Escapement_Report.pdf

Kennedy, T. and T. Cannon. 2005. Stanislaus River Salmonid Density and Distribution Survey Report (2002-2004). Fishery Foundation of California. Prepared for US Bureau of Reclamation, Central Valley project Improvement Act. October 2005. 20051027StanislausSnorkel_covers2002-2004.doc

Marston, D. 2002. Stanislaus Weir Summary (AKA: How Science and Bureaucracy met at a Weir in the Stanislaus River). California Department of Fish and Game. December 2002. StanWeirResponse120902.doc

Yuba River

CDFG. Lower Yuba River Chinook Salmon Escapement Survey. October 2007 – January 2008. 2007-2008 Yuba Escapement ReportFinal.pdf

Link to website with Lower Yuba River salmon and Steelhead information. Link to Yuba River website.docx

Lower Yuba River Fisheries Technical Working Group. 2005. Draft Implementation Plan for Lower Yuba River Anadromous Fish Habitat Restoration: Multi-Agency Plan to Direct Near-Term Implementation of Prioritized Restoration and Enhancement Actions and Studies to Achieve Long-Term Ecosystem and Watershed Management Goals. October 2005. Yuba River Restoration Implementation Plan.pdf

Massa, D., J. Bergman and R. Greathouse. 2010. Lower Yuba River Accord Monitoring and Evaluation Plan, Annual Vaki Riverwatcher Report, March 1, 2007 through February 29, 2008. Massa et al 2010 – 2007-08 Vaki Report – final.pdf

True, K. 2004. Draft Report – Fish Health Monitoring of Fall Chinook and Steelhead in the Yuba and Feather Rivers (2002-2003). April 2004. DWR DRAFT REPORT – Yuba River 2002-2003.pdf

Upper Yuba River Studies Program Study Team. 2007. Upper Yuba River Watershed Chinook Salmon and Steelhead Habitat Assessment. California Department of Water Resources. Technical Report. November 2007. yuba_salmon.pdf

Yuba County Water Agency (YCWA). 2011. Study 7.8: ESA/CESA Listed Salmonids Downstream of Englebright Dam. Yuba River Development Project, FERC Project No. 2246. Study 07-08 – ESA and CESA-Listed Salmonids Below Englebright.doc

Feather River Hatchery

Bilski, R., and J. Kindopp. 2009. Emigration of juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Feather River, 2005-2007. California Department of Water Resources, Division of Environmental Services. January 2009. Bilski and Kindopp 2009 Feather R salmonid outmigration.pdf

Brown, Randall. 2002. Phase 1 Interim Literature Review for SP-F9 Evaluation of Project Effects on Natural Salmonid Populations. Oroville Facilities Relicensing, FERC Project No. 2100. California Department of Water Resources. 11-20-02_enviro-att7.pdf

Brown, R.L. 2006. The First 50 Years of Chinook Culture with a note on Steelhead. Draft report prepared for the Water Forum, 660 J Street, Suite 260, Sacramento, CA. Brown 2000 FRH Net Pen Release info.pdf

Brown, R., B. Cavallo, and K. Jones. 2004. Oroville Facilities Relicensing (FERC Project No. 2100), Draft Report SP-F9, The Effects of the Feather River Hatchery on Naturally Spawning Salmonids. November 2004. Oroville FERC Study 9 (Feather River Hatchery).pdf

Cavallo, B., R. Brown, and D. Lee. 2009. Hatchery and Genetic Management Plan for Feather River Hatchery Spring-run Chinook Salmon Program. Prepared for California Department of Water Resources. HGMP_FeatherRiver_Chinook_200906.pdf

Cavallo, R., R. Kurth, J. Kindopp, and A. Seesholtz. 2004. SP F-10 3A Final Report: Distribution and Habitat use of Juvenile Steelhead and Other Fishes of the Lower Feather River. Oroville Facilities Relicensing, FERC Project No. 2100. California Department of Water Resources. Cavallo et al 2004 Feather River steelhead habitat.pdf

CDFG. 2009. Fish Pathologist Report – Feather River Hatchery, Spring Chinook, April 2, 2009. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. FRH 2009 Health Assessment Spring Chinook.pdf

CDFG. 2008. Fish Pathologist Report – Feather River Hatchery, Spring-Run Chinook, April Release, April 11, 2008. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. FRH 2008 Health Assessment Spring Chinook April Release.pdf

CDFG. 2001. Fish Pathologist Report – Feather River Hatchery, Fall Chinook, Pre-smolts, April 5, 2001. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. FRH 2001 Health Assessment Fall Chinook.pdf

CDFG. 2010. Fish Pathologist Report – Feather River Hatchery, Fall Run Chinook, June 9, 2010. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. FRH 2010 Health Assessment Fall Chinook.pdf

California Department of Water Resources. 2006. Draft Biological Assessment for Federally Listed Anadromous Fishes. Oroville Facilities Relicensing. FERC Project No. 2100. May 2006. Fish BA_DWR Mgmt_06May30_v 2.pdf

DWR. Draft Environmental Impact Report – Feather River Levee Repair Project. EDAW Fisheries. DWR 5.4 Fisheries.pdf

DWR. 2002. DWR Oroville Facilities Relicensing Project. SP-F9. Evaluation of the Feather River Hatchery Effects on Naturally Spawning Salmonids. FERC Project No. 2100. DWR FERC SP-F(9.pdf

DWR. 2003. SP F-10, Task 2B Report: 2003 Lower Feather River Steelhead (Oncorhynchus mykiss) redd survey. Oroville Facilities Relicensing, FERC Project No. 2100. July 10, 2003. DWR SH Redd 2003.pdf

DWR. 2004. SP-F5/7 Task 2 Report: Achievement of Current Stocking Goals. Oroville Facilities Relicensing, FERC Project No. 2100. California Department of Water Resources. 09-01-04_f5-7_task2_final.pdf

DWR. 2006. Settlement Agreement for Licensing of the Oroville Facilities, FERC Project No. 2100. California Department of Water Resources. March 2006. Final Settlement Agreement.pdf

DWR. 2009. FERC Draft BO Feather River Terms and Conditions – Summary of Chinook Actions. July 6, 2009. FERC Draft BO Feather River terms and Conditions_summary of Chinook actions.docx

Feather River Hatchery 2007-2008 data. Excel File. FRH 2007-2008 data.xls

Feather River Hatchery 2008-2009 Data. Excel File. FRH 2008-2009 data.xls

Feather River hatchery 2008-2009 Spawning data. Excel File. 2008 2009 SPAWNING.xls

Feather River Hatchery Steelhead Returns to Hatchery – Ad Clip Numbers. Excel File. Steelhead_HatcherySpawners.xlsx

Feather River Historical Spawner Abundance. Excel File. FR_Historical_SpawnerAbundance_11-22-10.xls

Feather River Steelhead Redd Survey Observations. Excel File. SteelheadReddSurvey_Table.xlsx

Feather River Spring Chinook CWT Recoveries. Excel File. Spring_Composition of Spawners_CWT_BY2004-2007.xlsx

Feather River Spring Chinook CWT Report by Release Location. Word Document. Spring_Composition of Spawners_metadata_DRAFT.docx

FERC. 1984. Order Amending License, Project No. 2100-024. State of California Department of Water Resources. FERC 2100 ammendment 1984.pdf

Hartwigsen, Kyle. 2008 Feather River Chinook Salmon Spawning Escapement Summary. FR-Escapement_2008.doc

Hartwigsen, Kyle. 2009 Feather River Chinook Salmon Spawning Escapement Summary. FR-Escapement_2009.doc

Hartwigsen, Kyle. 2010 Feather River Chinook Salmon Spawning Escapement Summary. FR-Escapement_2010.doc

Kurth, R. 2005. Redd dewatering and juvenile salmonid stranding in the Lower Feather River, 2004-2005. Interim Report for NOAA Fisheries. California Department of Water Resources, Division of Environmental Services. DWR 2005.pdf

Kurth, R. 2006. Redd dewatering and juvenile salmonid stranding in the Lower Feather River, 2005-2006. Interim Report for NOAA Fisheries. California Department of Water Resources, Division of Environmental Services. DWR 2006.pdf

Lee, D.P. 2008. Feather River Steelhead Hatchery and Genetic Management Plan, Discussion Points. April 24, 3008. Lee 2008 FRH Steelhead Genetics discussion points.doc

Mills, T.J., B. Cavallo, and R. Kurth. 2004. SP F-10 Final Report Distribution and Habitat Use of Juvenile Steelhead and other Fishes of the Lower Feather River. Oroville Facilities Relicensing FERC Project No. 2100. California Department of Water Resources. May 24, 2004. Distribution and Hab use of steelhead_FR.pdf

Mills. T.J. and J. Kindopp. 2003. River Flow Effects on Emigrating Juvenile Salmonids in the Lower Feather River. SPF10 Task 4A. Oroville Facilities Relicensing, FERC Project No. 2100. California Department of Water Resources. Feather Juv Salmonids 2003.pdf

MWH. 2003. Evaluation of Project Effects on Fish Disease. Oroville FERC Relicensing Draft Report SP-F2, Task 1 and 2. March 20, 2003. Keefe 2002 Oroville fish disease.pdf

Palmer-Zwahlen, M.L., A.M. Grover and J.A. Duran. 2004. Feather River Fall Chinook Cohort Reconstruction – Brood Year 1998. July 2, 2004. FRH fall chinook cohort reconstruction report July 04.pdf

Palmer-Zwahlen, M.L., A.M. Grover and J.A. Duran. 2006. Feather River Chinook Cohort Reconstruction Brood Years 1998 and 1999 / Fall and Spring Runs. California Department of Fish and Game. Feather River Chinook Cohort Reconstruction June 16 Final D_.pdf

Appendix 1. 1995-2002 Feather River Hatchery and Wild Chinook CWT and Non-CWT Releases by Release Group and Location. FRHCohortReconstruction Appendix1-6.pdf

Sholes, W.H. and R.J. Hallock. 1979. An evaluation of rearing fall-run Chinook salmon, Oncorhynchus tshawytscha, to yearlings at Feather River Hatchery, with a comparison of returns from hatchery and downstream releases. California Fish and Game (65)4: 239-255. Sholes 1979.pdf

Sommer, T., D. McEwan and R. Brown. Factors Affecting Chinook Salmon Spawning in the Lower Feather River. Fish Bulletin 179: Volume One. fb179v1_2.pdf

Surface Water Resources, Inc. (SWRI). 2003. Literature review of life history and habitat requirements for Feather River fish species. Oroville FERC Relicensing (Project No. 2100) Interim Report, SP-F3.2 Task 2, SP-F21 Task 1. January 2003. SWRI 2003 FR fish composition.pdf

Wilkinson, C., J. Kindopp, C. Cook, S. Kennedy, S. Brumbaugh and M. Murray. 2010. Draft Lower Feather River Fish Counting Weir Implementation Plan, License Article A105, Phase 1. Oroville Facilities, FERC Project No. 2100. California Department of Water Resources. November 19, 2010. FR Count Weir Draft 6-28-11.docx

Feather River Hatchery Annual Reports 2007-2010.

1998-1999 FRH AR 1998-99.doc

1999-2000 FRH AR 1999-00.doc

2000-2001 FRH AR 2000-2001.doc

2001-2002 FRH AR 2001-02.doc

2002-2003 FRH AR 2002-03.doc

2003-2004 FRH AR 2003-04 DRAFT.doc

2004-2005 FRH AR 2004-05 DRAFT.doc

2005-2006 FRH AR 2005-06 DRAFT.doc

2006-2007 FRH AR 2006-07DRAFT.doc

2007-2008 FRH 2007-08 Annual Report Draft.doc

2008-2009 FRH 2008-09 Annual Report Draft.doc

2009-2010 FRH 2009_10 Annual Report Draft DPLee edit.doc

Livingstone Stone NFH

USFWS. 2010. Release Report for brood year 2010 winter Chinook salmon juveniles propagated at the U.S. Fish and Wildlife Service”™s Livingston Stone National Fish Hatchery. U.S. Fish and Wildlife Service. BY 2010 Effective Population Estimate- Final.doc

USWFS. 2010. Brood Year 2010 Release Report Tables 1-3. Excel File. By 2010 Release Report Tables 1-3.xlsx

Winter Chinook Data Tables – Handouts from meeting on 6-8-2011. Winter Chinook Handouts 6-8-11.pdf

Winter Chinook Salmon Adults

USFWS. 2000. Sample Summary – 2000 Winter Chinook Adults, Livingston Stone HFH. California-Nevada Fish Health Center. WCS_AD_2000 SRW SS table.pdf

USFWS. 2001. Sample Summary – 2001 Winter Chinook Adults, Livingston Stone HFH. California-Nevada Fish Health Center. WCS_AD_2001 SST and FHIR.pdf

USFWS. 2002. Sample Summary – 2002 Winter Chinook Adults, Livingston Stone HFH. California-Nevada Fish Health Center. WCS_AD_2002 SST and FHIR.pdf

USFWS. 2004. Sample Summary – 2004 Winter Chinook Adults, Livingston Stone HFH. California-Nevada Fish Health Center. WCS_AD_2004 SRW SS table.pdf

USFWS. 2005. Sample Summary – 2005 Winter Chinook Adults, Livingston Stone HFH. California-Nevada Fish Health Center. WCS_AD_2005 SRW SS table.pdf

USFWS. 2006. Sample Summary – 2006 Winter Chinook Adults, Livingston Stone HFH. California-Nevada Fish Health Center. WCS-Adult-2006 Sample Summary.doc

USFWS. 2007. Sample Summary – 2007 Winter Chinook Adults, Livingston Stone HFH. California-Nevada Fish Health Center. WCS-Adult-2007 Sample Summary.doc

USFWS. 2008. Sample Summary – 2008 Winter Chinook Adults, Livingston Stone HFH. California-Nevada Fish Health Center. WCS-Adult-2008 Sample Summary 10-1-2008 FINAL.doc

USFWS. 2009. Sample Summary – 2009 Winter Chinook Adults, Livingston Stone HFH. California-Nevada Fish Health Center. WCS-Adult-2009 Samle Summary 11-25-09.doc

USFWS. 2010. Sample Summary – 2010 Winter Chinook Adults, Livingston Stone HFH. California-Nevada Fish Health Center. WCS-Adult-2010 Samle Summary 8-30-2010.doc

Winter Chinook Salmon Juveniles

USFWS. 2000. Stock Summary Report: Livingston Stone NFH 2000 Winter Chinook Juveniles. California-Nevada Fish Health Center. wcs 2000 Juv FHIR.pdf

USFWS. 2001. Stock Summary Report: Livingston Stone NFH 2001 Winter Chinook Juveniles. California-Nevada Fish Health Center. wcs 2001 Juv FHIR.pdf

USFWS. 2002. Stock Summary Report: Livingston Stone NFH 2002 Winter Chinook Juveniles. California-Nevada Fish Health Center. wcs 2002 Juv FHIR.pdf

USFWS. 2003. Stock Summary Report: Livingston Stone NFH 2003 Winter Chinook Juveniles. California-Nevada Fish Health Center. wcs 2003 Juv FHIR.pdf

USFWS. 2004. Stock Summary Report: Livingston Stone NFH 2004 Winter Chinook Juveniles. California-Nevada Fish Health Center. wcs 2004 Juv FHIR.pdf

USFWS. 2005. Stock Summary Report: Livingston Stone NFH 2005 Winter Chinook Juveniles. California-Nevada Fish Health Center. wcs 2005 Juv FHIR.pdf

USFWS. 2006. Stock Summary Report: Livingston Stone NFH 2006 Winter Chinook Juveniles. California-Nevada Fish Health Center. WCS-SRW-06-LIV.doc

USFWS. 2007. Stock Summary Report: Livingston Stone NFH 2007 Winter Chinook Juveniles. California-Nevada Fish Health Center. WCS07 JUV SSR Jan14.doc

USFWS. 2008. Sample Summary Table: 2008 Juvenile Winter Run Chinook. California-Nevada Fish Health Center. WCS-SRW-08-LIV SS table Jan 2009.doc

USFWS. 2009. Sample Summary Table: 2009 Juvenile Winter Run Chinook. California-Nevada Fish Health Center. WCS-SRW-09-LIV SS table Feb 2010.doc

USFWS. 2010. Sample Summary Table: 2010 Juvenile Winter Run Chinook. California-Nevada Fish Health Center. WCS-SRW-10-LIV SS1 table Dec 2010.docx

Coleman NFH

USFWS. 2011. Draft Biological Assessment of Artificial Propagation at Coleman National Fish Hatchery and Livingston Stone National Fish Hatchery: program description and incidental take of Chinook salmon and steelhead. U.S. Fish and Wildlife Service, Red Bluff Fish and Wildlife Office, Red Bluff, California. Draft April 2011. 2011 CNFH-LSNFH BA – complete with watermark.pdf

USFWS. 2011. Biological Assessment of Artificial Propagation at Coleman National Fish Hatchery and Livingston Stone National Fish Hatchery: program description and incidental take of Chinook salmon and steelhead. U.S. Fish and Wildlife Service, Red Bluff Fish and Wildlife Office, Red Bluff, California. July 2011. 2011_Biological_Assessment.pdf

Fall Chinook Salmon Adults

Fish Health Inspection Reports

USFWS. 2006. Coleman National Fish Hatchery – Fish Health Inspection Report October 26, 2006. California-Nevada Fish Health Center. FCS-BCW-06-AD, KT.pdf

USFWS. 2007. Coleman National Fish Hatchery – Fish Health Inspection Report October 29, 2007. California-Nevada Fish Health Center. FCS-BCW-07-AD, RS.pdf

USFWS. 2008. Coleman National Fish Hatchery – Fish Health Inspection Report October 30, 2008. California-Nevada Fish Health Center. FCS-BCW-08-AD, LR.pdf

USFWS. 2009. Coleman National Fish Hatchery – Fish Health Inspection Report November 3, 2009. California-Nevada Fish Health Center. FCS-BCW-09-AD, AB.pdf

USFWS. 2010. Coleman National Fish Hatchery – Fish Health Inspection Report December 2010. California-Nevada Fish Health Center. FCS-BCW-10-AD, AB.pdf

Stock Summary Reports

USFWS. 2006. Sample Summary – 2006 Fall Chinook Adults. Coleman NFH, October 10-26, 2006. California-Nevada Fish Health Center. FCS AD 2006 Sample Summary, KT.doc

USFWS. 2007. Sample Summary – 2007 Fall Chinook Adults. Coleman NFH, October 11-29, 2007. California-Nevada Fish Health Center. FCS AD 2007 Sample Summary, RS.doc

USFWS. 2008. Sample Summary – 2008 Fall Chinook Adults. Coleman NFH, October 10, 14, and 21, 2008. California-Nevada Fish Health Center. FCS AD 2008 Sample Summary, LR.doc

USFWS. 2009. Sample Summary – 2009 Fall Chinook Adults. Coleman NFH, October 13, 17, 27, and November 3, 2009. California-Nevada Fish Health Center. FCS AD 2009 Sample Summary, AB.doc

USFWS. 2010. Sample Summary – 2010 Fall Chinook Adults. Coleman NFH, October 7, and October 12, 2010. California-Nevada Fish Health Center. FCS AD 2010 Sample Summary, AB.doc

Fall Chinook Salmon juveniles

Fish Health Inspection Reports

USFWS. 2005. Coleman National Fish Hatchery Chinook – Fish Health Inspection Report April 7, 2005. California-Nevada Fish Health Center. FCS-BCW-05-CO, RS.pdf

USFWS. 2007. Coleman National Fish Hatchery Chinook – Fish Health Inspection Report April 10, 2007. California-Nevada Fish Health Center. FCS-BCW-2006-COL, RS final release.pdf

USFWS. 2008. Coleman National Fish Hatchery Chinook – Fish Health Inspection Report April 22, 2008. California-Nevada Fish Health Center. FCS-BCW-2007-COL, RS final release.pdf

USFWS. 2009. Coleman National Fish Hatchery Chinook – Fish Health Inspection Report December, 2009. California-Nevada Fish Health Center. FCS-BCW-2009-COL, SF.pdf

USFWS. 2010. Coleman National Fish Hatchery Chinook – Fish Health Inspection Report December 2010. California-Nevada Fish Health Center. FCS-BCW-2010-COL, AB – Prelim Data.pdf

Stock Summary Reports

USFWS. 2003. Sample Summary Table – 2003 Juvenile Fall Chinook salmon, Coleman NFH. California-Nevada Fish Health Center. April 2003. FCS-BCW-2005-COL SS table.doc

USFWS. 2006. Sample Summary Table – 2006 Juvenile Fall Chinook salmon, Coleman NFH. California-Nevada Fish Health Center. FCS-BCW-2006-COL SS table.doc

USFWS. 2007. Sample Summary Table – 2007 Juvenile Fall Chinook salmon, Coleman NFH. California-Nevada Fish Health Center. January 25, 2007. FCS-BCW-2007-COL SS table.doc

USFWS. 2008. Sample Summary Table – 2008 Juvenile Fall Chinook salmon, Coleman NFH. California-Nevada Fish Health Center. FCS-BCW-2008-COL SS table.doc

USFWS. 2009. Sample Summary Table – 2009 Juvenile Fall Chinook salmon, Coleman NFH. California-Nevada Fish Health Center. FCS-BCW-2009-COL SS table, SF.doc

USFWS. 2010. Sample Summary Table – 2010 Juvenile Fall Chinook salmon, Coleman NFH. California-Nevada Fish Health Center. FCS-BCW-2010-COL SS table, AB – Prelim data.doc

Late Fall Chinook Salmon adults

Sample Summary reports

USFWS. 2000. Sample Summary: 2000 Late Fall Chinook Adult – Battle Creek Run (LFS-BCW-adult), Coleman NFH. California-Nevada Fish Health Center. LFS-BCW-2000-Adult SS.doc

USFWS. 2001. Sample Summary: 2001 Late Fall Salmon Adults – Battle Creek Stock (LFS-BCW-01-adult), Coleman NFH. California-Nevada Fish Health Center. LFS-BCW-2001-Adult SS.doc

USFWS. 2002. Sample Summary: 2002 Late Fall Chinook Salmon Adults – Battle Creek Run (LFS-BCW-adult), Coleman NFH. California-Nevada Fish Health Center. LFS-BCW-2002-Adult SS.pdf

USFWS. 2003. Sample Summary: 2003 Late Fall Chinook Adults – Battle Creek and Keswick returns) LFS-BCW & KEW-Adult), Coleman NFH. California-Nevada Fish Health Center. LFS-BCW-2003-Adult SS.doc

USFWS. 2004. Sample Summary: 2004 Late Fall Chinook Adults – Battle Creek and Keswick Returns (LFS-BCW & KEW-adult), Coleman NFH. California-Nevada Fish Health Center. LFS-BCW-2004-Adult SS.doc

USFWS. 2005. Sample Summary: 2005 Late Fall Chinook Adults – Battle Creek and Keswick returns (LFS-BCW & KEW-adult), Coleman NFH. California-Nevada Fish Health Center. LFS-BCW-2005-Adult SS.doc

USFWS. 2006. Sample Summary: 2006 Late Fall Chinook Adult – Battle Creek and Keswick returns, Coleman NFH. California-Nevada Fish Health Center. LFSBCWKEW06Adult table.doc

USFWS. 2007. Sample Summary: 2007 Adult Late Fall Chinook – Battle Creek and Keswick Wild Stocks. California-Nevada Fish Health Center. LFS-BCW-2007 & LFS-KEW-2007 Adults.doc

USFWS. 2008. Sample Summary: 2008 Coleman NFH Adult Late Fall Chinook – Battle Creek. California-Nevada Fish Health Center. Sample Summary LFS-BCW-2008-Adult.doc

USFWS. 2009. Sample Summary: 2009 Coleman NFH Adult Late Fall Chinook – Battle Creek. California-Nevada Fish Health Center. LFS-BCW-2009-Adult Sample Summary.doc

USFWS. 2009. Sample Summary: 2009 Keswick Naturally Produced Sacramento River Adult Late Fall Chinook – Battle Creek. California-Nevada Fish Health Center. LFS-KES-2009-Adult Sample Summary.doc

USFWS. 2010. Sample Summary: 2010 Naturally Produced Adult Late Fall Chinook – Sacramento River (Keswick Trap). California-Nevada Fish Health Center. Sample Summary LFS-KES-2010-Adult.doc

USFWS. 2011. Sample Summary: 2011 Coleman NFH Adult Late Fall Chinook – Battle Creek. California-Nevada Fish Health Center. Sample Summary LFS-BCW-2011-Adult (COL&KES).docx

Late Fall Chinook Salmon Juvenile

USFWS. 2000. Sample Summary Table: 2000 Juvenile late Fall Chinook. California-Nevada Fish Health Center. LFS-BCW-2000-COL SS.doc

USFWS. 2001. Sample Summary Table: 2001 Juvenile late Fall Chinook. California-Nevada Fish Health Center. LFS-BCW-2001-COL SS.doc

USFWS. 2002. Sample Summary Table: 2002 Juvenile late Fall Chinook. California-Nevada Fish Health Center. LFS-BCW-2002-COL SS.doc

USFWS. 2003 Sample Summary Table: 2003 Juvenile late Fall Chinook. California-Nevada Fish Health Center. LFS-BCW-2003-COL SS.doc

USFWS. 2004 Sample Summary Table: 2004 Juvenile late Fall Chinook. California-Nevada Fish Health Center. LFS-BCW-2004-COL SS.doc

USFWS. 2005. Sample Summary Table: 2005 Juvenile late Fall Chinook. California-Nevada Fish Health Center. LFS-BCW-2005-COL SS.doc

USFWS. 2006. Sample Summary Table: 2006 Juvenile late Fall Chinook. California-Nevada Fish Health Center. LFS-BCW-06-COL SS table.doc

USFWS. 2007. Sample Summary Table: 2007 Juvenile Late Fall Chinook. California-Nevada Fish Health Center. LFS-BCW-07-COL SS table Jan 2008.doc

LFS-BCW-07-COL SS table Nov 2007.doc

USFWS. 2008. Sample Summary Table: 2008 Juvenile Late Fall Chinook. California-Nevada Fish Health Center. LFS-BCW-08-COL SS table Dec 2008.doc

USFWS. 2009. Sample Summary Table: 2009 Juvenile Late Fall Chinook. California-Nevada Fish Health Center. LFS-BCW-09-COL SS table Nov 2009.doc

USFWS. 2010. Sample Summary Table: 2010 Juvenile Late Fall Chinook. California-Nevada Fish Health Center. LFS-BCW-10-COL SS table Nov 2010.doc

Steelhead Adult

USFWS. 2000. Sample Summary: 2000 Steelhead Adults – Battle Creek Stock (STT-SBW-00-Adult), Coleman NFH. California-Nevada Fish Health Center. STT-SBW-2000-Adult SS.doc

USFWS. 2001. Sample Summary: 2001 Steelhead Adults – Battle Creek Stock (STT-SBW-01-Adult), Coleman NFH. California-Nevada Fish Health Center. STT-SBW-2001-Adult SS.doc

USFWS. 2002. Sample Summary: 2002 Steelhead Adults – Battle Creek Stock (STT-SBW-02-Adult), Coleman NFH. California-Nevada Fish Health Center. STT-SBW-2002-Adult SS.doc

USFWS. 2003. Sample Summary: 2003 Steelhead Adults – Battle Creek Stock (STT-SBW-03-Adult), Coleman NFH. California-Nevada Fish Health Center. STT-SBW-2003-Adult SS.doc

USFWS. 2004. Sample Summary: 2004 Steelhead Adults – Battle Creek Stock (STT-SBW-04-Adult), Coleman NFH. California-Nevada Fish Health Center. STT-SBW-2004-Adult SS.doc

USFWS. 2006. Coleman National Fish Hatchery Steelhead – Fish Health Inspection Report. February 16, 2006. California-Nevada Fish Health Center. STT-SBW-06-COL-Adult FHIR.doc

USFWS. 2007. Sample Summary: 2007 Steelhead Adults – Battle Creek returns, Coleman NFH. California-Nevada Fish Health Center. STT-SBW-07-AD.doc

USFWS. 2008. Sample Summary: 2008 Steelhead Adults – Battle Creek returns, Coleman NFH. California-Nevada Fish Health Center. STT-SBW-08-AD.doc

USFWS. 2009. Sample Summary: 2009 Steelhead Adult – Battle Creek. California-Nevada Fish Health Center. STT-SBW-09-Adult.doc

USFWS. 2010. Sample Summary: 2010 Steelhead Adult – Battle Creek. California-Nevada Fish Health Center. Stock Summary STT-SBW-10-Adult.doc

Steelhead Juvenile

USFWS. 2000. Sample Summary Table: 2000 Juvenile Steelhead. California-Nevada Fish Health Center. STT-SBW-2000-COL SS.doc

USFWS. 2001. Sample Summary Table: 2001 Juvenile Steelhead. California-Nevada Fish Health Center. STT-SBW-2001-COL SS.doc

USFWS. 2002. Sample Summary Table: 2002 Juvenile Steelhead. California-Nevada Fish Health Center. STT-SBW-2002-COL SS.doc

USFWS. 2003. Sample Summary Table: 2003 Juvenile Steelhead. California-Nevada Fish Health Center. STT-SBW-2003-COL SS.doc

USFWS. 2004. Sample Summary Table: 2004 Juvenile Steelhead. California-Nevada Fish Health Center. STT-SBW-2004-COL SS.doc

USFWS. 2005. Sample Summary Table: 2005 Juvenile Steelhead. California-Nevada Fish Health Center. STT-SBW-05-COL SS table.doc

USFWS. 2006. Sample Summary Table: 2006 Juvenile Steelhead. California-Nevada Fish Health Center. STT-SBW-06-COL SS table.doc

USFWS. 2007. Sample Summary Table: 2007 Juvenile Steelhead. California-Nevada Fish Health Center. STT-SBW-07-COL SS table.doc

USFWS. 2008. Sample Summary Table: 2008 Juvenile Steelhead. California-Nevada Fish Health Center. STT-SBW-08-COL SS table.doc

USFWS. 2009. Sample Summary Table: 2009 Juvenile Steelhead. California-Nevada Fish Health Center. STT-SBW-09-COL SS table.doc

USFWS. 2010. Sample Summary Table: 2010 Juvenile Steelhead. California-Nevada Fish Health Center. STT-SBW-2010-COL SS.doc

Upper Sacramento Tribs (Cow Creek, Cottonwood Creek)

Killam, D. 2008. Results of the 2007 Cow Creek Video Station Fall-Run Chinook Salmon Escapement. California Department of Fish and Game, Northern Region, Sacramento River Salmon and Steelhead Assessment Project. SRSSAP Technical Report No. 08-2. 2007_CowCreekVideoStation.pdf

Killam, D. 2008. Results of the 2007 Cottonwood Creek Video Station Fall-Run Chinook Salmon Escapement. California Department of Fish and Game, Northern Region, Sacramento River Salmon and Steelhead Assessment Project. SRSSAP Technical Report No. 08-3. 2007_CottonwoodCreekVideoStation.pdf

Killam, D. and M. Johnson. 2008. 2007 Mill Creek video station steelhead and spring-run Chinook salmon counts. Pacific States Marine Fisheries Commission. California Department of Fish and Game, Northern Region, Sacramento River Salmon and Steelhead Assessment Project. SRSSAP Technical Report No. 08-1. MillCreek_VideoStationFINAL.pdf

Killam, D. 2007. Results of the 2006 Cow Creek Video Station Fall-Run Chinook Salmon Escapement. California Department of Fish and Game, Northern California-North Coast Region, Sacramento River Salmon and Steelhead Assessment Project. SRSSAP Technical Report No. 07-1. 2006_CowCreek_VS_Report.pdf

Killam, D. 2006. Results of the Experimental Video Station for Fall-Run Chinook Salmon Escapement into Battle Creek for Years 2003-2005. California Department of Fish and Game, Northern California-North Coast Region, Sacramento River Salmon and Steelhead Assessment Project. SRSSAP Technical Report No. 06-1. 2005Final_3yr_BattleCreek_VideoStationRpt.pdf

Killam, D. 2004. Results of the Experimental Video Station for Fall-Run Chinook Salmon Escapement into Battle Creek in 2003. California Department of Fish and Game, Northern California-North Coast Region, Sacramento River Salmon and Steelhead Assessment Project. SRSSAP Technical Report No. 04-2. Final2003_VS_Report.pdf

Central Valley South (San Joaquin Valley)

American River

Cannon, T.C. and T. Kennedy. 2003. Snorkel Survey of the Lower American River 2003. Prepared by Fishery Foundation of California. U.S. Fish and Wildlife Service, Central Valley Project Improvement Program, Sacramento, California. September 2003. Cannon and Kennedy 2003 American_River_snorkel_report.pdf

Chase, R. 2010. Lower American River Steelhead (Oncorhynchus mykiss) Spawning Surveys – 2010. US Bureau of Reclamation, Central Valley Project, American River, California, Mid-Pacific Region. September 2010. 2010 LAR Steelhead Spawning Report.pdf

Colt, J.E., K. Orwicz, and D. Brooks. 1991. Gas supersaturation in the American River. California Fish and Game 77(1): 41-50. Colt 1991.pdf

Gerstung, E.R. 1971. A Report to the California State Water Resources Control Board on the Fish and Wildlife Resources of the American River to be Affected by the Auburn Dam and Reservoir and the Folsom South Canal and Measures Proposed to Maintain These Resources. June 1971.

Hannon, J., M. Healey, and B. Deason. 2003. American River Steelhead (Oncorhynchus mykiss) Spawning 2001-2003. US Bureau of Reclamation, Central Valley Project, American River, California, Mid-Pacific Region. October 2005. Hannon et al. 2003 – American River steelhead spawning 2001-2003.pdf

Hannon, J. and B. Deason. 2005. American River Steelhead (Oncorhynchus mykiss) Spawning 2001-2005. US Bureau of Reclamation, Central Valley Project, American River, California, Mid-Pacific Region. October 2005. Hannon and Deason 2005 – LAR steelhead spawning 2001-2005.pdf

Hannon, J. and B. Deason. 2008. American River Steelhead (Oncorhynchus mykiss) Spawning 2001-2007. US Bureau of Reclamation, Central Valley Project, American River, California, Mid-Pacific Region. October 2005. Hannon and Deason 2008 – AmericanRSteelhead.pdf

Merz, J.E., M. Beakes, and C.B. Watry. 2010. Effects of the Sunrise Side Channel Project on salmonid habitat suitability and use in the lower American River, California. Sacramento Water Forum, Sacramento, California. SunriseSC_Report_Final_30Nov2010.pdf

Meyer, F.A. 1985. Summer-run steelhead experiments in the Feather and American Rivers. California Department of Fish and Game. Anadromous Fisheries Administrative Report 85-4. Sacramento, CA. 8 p. Meyer 1985.pdf

See, M. and R. Chase. 2010. Lower American River Steelhead (Oncorhynchus mykiss) Spawning Surveys 2009. US Bureau of Reclamation, Central Valley Project, American River, California, Mid-Pacific Region. 2009 LAR Steelhead Spawning Report.pdf

Snider, B. and B. Reavis. 1996. Lower American River Chinook Salmon Escapement Survey, October 1995 – January 1996. Technical Report No. 96-4. July 1996. Snider and Reavis 1996 – LAR escapement 1995-96.pdf

Snider, B. and R.G. Titus. 1995. Lower American River Emigration Survey, November 1993 – July 1994. August 1995. Snider and Titus 1995 – LAR emigration 1993-94.pdf

Snider, B., R.G. Titus and B.A. Payne. 1997. Lower American River Emigration Survey, November 1994 – September 1995. Technical Report No. 97-3. September 1997. Snider et al 1997 – LAR emigration 1994-95.pdf

Snider, B., R.G. Titus and B.A. Payne. 1998. Lower American River Emigration Survey, October 1995 – September 1996. Technical Report No. 98-6. September 1998. Snider et al 1998 – LAR emigration 1995-1996.pdf

Snider, B. and R.G. Titus. 2000. Lower American River Emigration Survey, October 1996 – September 1997. Technical Report No. 00-2. January 2000. Snider and Titus 2000 – LAR emigration 1996-97.pdf

Snider, B. and R.G. Titus. 2002. Lower American River Emigration Survey, October 1998 – September 1999. Technical Report No. 02-2. September 2002. Snider and Titus 2002 – LAR emigration 1998-99.pdf

Staley, J.R. 1976. American River steelhead (Salmo gairdnerii gairdnerii) management 1956-74. California Department of Fish and Game. Anadromous Fisheries Administrative Report No. 76-2. Sacramento, CA. 44 p. Staley 1976.pdf

Surface Water Resources, Inc. 2001. Aquatic Resources of the lower American River: Baseline Report. Draft Report. Prepared for the Lower American River Fisheries And Instream Habitat (FISH) Working Group. Funded by CALFED, Water Forum, SAFCA, and the City of Sacramento. SWRI 2001 – American River Baseline Report.pdf

USFWS (United States Fish and Wildlife Service), and (DFG) California Department of Fish and Game. 1953. A plan for the protection and maintenance of salmon and steelhead in the American River, California, together with recommendations for action. Final Report prepared for DFG, Sacramento, CA. USFWS and DFG 1953 American River.pdf

Water Forum. 2001. Initial Fisheries and In-stream habitat management and restoration plan for the Lower American River (FISH Plan). Sacramento, CA. 160 p. Water Forum 2001.pdf

Water Forum. 2004. Draft policy document Lower American River flow management standard. Sacramento, CA. 21 p. Water Forum 2004.pdf

2010 American River Steelhead Redds Map. 2010AmRSHredds.pdf

2011 American River Steelhead Redds thru Feb 9 Map. 2011AmRSHreddsThruFeb9.pdf

American River Steelhead acoustic tagging Power Point Am River acoustic smolts.pptx

Nimbus Hatchery

Brown, R.L. 2006. The First 50 Years of Chinook Culture with a note on steelhead. Draft report prepared for the Water Forum, 660 J Street, Suite 260, Sacramento, CA 95814. Brown 2006.doc

CDFG. 2000. Fish Pathologist Report – Nimbus Hatchery, Chinook salmon fingerlings, May 4, 2000. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. Nimbus 2000 Health Assessment Chinook.pdf

CDFG. 2000. Fish Pathologist Report – Nimbus Hatchery, Steelhead fingerlings, June 1, 2000. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. Nimbus 2000 Health Assessment Steelhead.pdf

CDFG. 2004. Fish Pathologist Report – Nimbus Hatchery, Fall Chinook, 2004. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. Nimbus 2004 Health Assessment Chinook.pdf

CDFG. 2005. Fish Pathologist Report – Nimbus Hatchery, Chinook Salmon Smolts, June 22, 2005. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. Nimbus 2005 Health Assessment Chinook.pdf

CDFG. 2005. Fish Pathologist Report – Nimbus Hatchery, Chinook Salmon Smolts, June 3, 2005. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. Nimbus 2005 Health Assessment Chinook 6-3-05.pdf

CDFG. 2009. Fish Pathologist Report – Nimbus Hatchery, Steelhead fingerlings, July 6-9, 2009 and July 13-16, 2009. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. Nimbus 2009 Health Assessment Steelhead.pdf

CDFG. 2010. Fish Pathologist Report – Nimbus Hatchery, Fall Run Chinook, May 5, 2010. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. Nimbus 2010 Health Assessment Fall Chinook 5-5-10.pdf

CDFG. 2010. Fish Pathologist Report – Nimbus Hatchery, Fall Run Chinook, February 16, 2010. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. Nimbus 2010 Health Assessment Fall Run Chinook.pdf

CDFG. 2011. Fish Pathologist Report – Nimbus Hatchery, Chinook, May 4, 2011. California Department of Fish and Game, Fish Health Laboratory, Rancho Cordova, California. Nimbus 2011 Health Assessment Chinook.pdf

CDFG. 2011. Head Tag Recovery Data, 2010-2011. Heads collected at Nimbus_2010-2011.pdf

CDFG and USBOR. 1953. Contract Between the United States and the State of California for the Operation of the Nimbus Fish Hatchery. DFG USFWS Contract NFH 1953.pdf

CDFG Fish Health Lab. 2006. Fish Health Lab Recommendations for Biosecurity at Nimbus Fish Hatchery. October 2, 2006. NFH Biosecurity 10_2006.pdf

Langley, S. 1986. Central Valley Fish and Wildlife Management Study: Nimbus Hatchery Enlargement. U.S. Bureau of Reclamation, Mid-Pacific Region, Sacramento, California. June 1986. Langley 1886.pdf

Lee, D.P. and J. Chilton. 2007. Hatchery and Genetic Management Plan for Nimbus Fish Hatchery Winter-Run Steelhead Program. California Department of Fish and Game. HGMP_Nimbus_Steelhead_200712.pdf

Lee, D.P. and J. Chilton. 2007. Hatchery and Genetic Management Plan American River Fall-Run Chinook Salmon Program. California Department of Fish and Game. HGMP_American River_Chinook_200711.pdf

Moyle, P. 2003. Nimbus and American River Fish Hatcheries. Moyle 2003.pdf

Nimbus Fish Hatchery. 2009. Study Description Evaluation of Nimbus Fish Hatchery Fall Chinook salmon release methods and locations. NFHfall run Chinook salmon release study April 2009 ver 2.doc

Nimbus Annual Reports 1955-2010.

1955-1956 1955-56.pdf

1956-1957 1956-57.pdf

1957-1958 1957-58.pdf

1958-1959 1958-59.pdf

1959-1960 1959-60.pdf

1960-1961 1960-61.pdf

1961-1962 1961-62.pdf

1962-1963 1962-63.pdf

1963-1964 1963-64.pdf

1964-1965 1964-65.pdf

1965-1966 1965-66.pdf

1966-1967 1966-67.pdf

1967-1968 1967-68.pdf

1968-1969 1968-69.pdf

1969-1970 1969-70.pdf

1970-1971 1970-71.pdf

1971-1972 1971-72.pdf

1972-1973 1972-73.pdf

1973-1974 1973-74.pdf

1974-1975 1974-75.pdf

1975-1976 1975-76.pdf

1976-1977 1976-77.pdf

1977-1978 1977-78.pdf

1978-1979 1978-79.pdf

1979-1980 1979-80.pdf

1980-1981 1980-81.pdf

1981-1982 1981-82.pdf

1982-1983 1982-83.pdf

1983-1984 1983-84.pdf

1984-1985 1984-85.pdf

1985-1986 1985-86.pdf

1986-1987 1986-87.pdf

1987-1988 1987-88.pdf

1988-1989 1988-89.pdf

1989-1990 1989-90.pdf

1990-1991 1990-91.pdf

1991-1992 1991-92.pdf

1992-1993 1992-93.pdf

1993-1994 1993-94.pdf

1994-1995 1994-95.pdf

1995-1996 1995-96.pdf

1996-1997 1996-97.pdf

1997-1998 1997-98.pdf

1998-1999 1998-99.pdf

1999-2000 1999-00.pdf

2000-2001 2000-01.pdf

2001-2002 2001-02.pdf

2002-2003 2002-03.pdf

Word Doc – AR 2002-2003 Final Draft DPLee editor.doc

2003-2004 2003-04.pdf

Word Doc – AR 2003-2004 Final Draft DPLee editor.doc

2004-2005 2004-05.pdf

Word Doc – AR 2004-2005 Final Draft DPLee editor.doc

2005-2006 2005-06.pdf

2006-2007 NFH Annnual Report 2006-07 Paula Hoover.doc

2007-2008 NFH Annual Report 2007-2008 Edited DLee.doc

2008-2009 NFH Annual Report 2008-2009 Final Draft DPLee editor.doc

2009-2010 NFH Annual Report 2009-2010 DPLee edit.doc

Merced River

Merced River Fish Facility

CDFG. 2003. Fish Pathologist Report: Merced River Fish Hatchery October 30, 2003 Brook trout adults. MercedRiver2003.pdf

CDFG. 2004. Fish Pathologist Report: Merced River Hatchery RTH catchables (Moccasin). MercedRiver2004.pdf

CDFG. 2008. Fish Pathologist Report: Merced River Fish Hatchery February 7, 2008. Fall Chinook Salmon fry, Lots 3-5 in same tank. Merced River 2-7-08.doc

CDFG. 2008. Fish Pathologist Report: Merced River Fish Hatchery March 5, 2008. Fall Chinook Salmon fingerlings, Lots 1-5 in same tank. Merced River 3-5-08.doc

CDFG. 2008. Fish Pathologist Report: Merced River Fish Hatchery July 14, 2008. Brook trout advanced fingerlings, Moccasin hatchery origin. MercedTMKMnO414jul08.doc

CDFG. 2008. Fish Pathologist Report: Merced River Fish hatchery November 18, 2008. Brood trout yearlings, San Joaquin hatchery origin. Merced18nov08.doc

CDFG. 2008. Fish Pathologist Report: Merced River Fish Hatchery November 24, 2008. Brook trout. Merced River 11-24-08.doc

CDFG. 2009. Fish Pathologist Report: Merced River Hatchery March 12, 2009. Fall Chinook fry. merced12mar09oxytet_1.doc

CDFG. 2011. Fish Pathologist Report: Merced River Hatchery April 14, 2011. Fall Chinook fry. Merced River Path Report 4-14-11.doc

CDFG. 2011. Fish Pathologist Report: Merced River Fish Hatchery March 8, 2011. Chinook salmon. MercedRiver.030811-1.doc

CDFG. 2011. Fish Pathologist Report: Merced River Fish Hatchery January 24, 2011 Fall Chinook Salmon fry. Merced River 012411.doc

CDFG. 2000. Fish Pathologist Report: Merced River Fish Hatchery 2000 Fall Chinook Salmon. Merced 2000 Health Assessment Fall Chinook.pdf

Foott, JS, R Stone, and K Nichols. 2005. FY2005 Investigational report: The effects of Proliferative Kidney Disease on blood constituents, swimming performance and saltwater adaptation in Merced River Hatchery juvenile Chinook salmon used in the 2005 VAMP study. U.S. Fish & Wildlife Service California – Nevada Fish Health Center, Anderson, CA. reports_files_Sacramento & San Joaquin River_PKD & physiological effects in MRH Chinook – 2005 VAMP study.pdf

Annual Reports, Merced River Hatchery, 1970-1990, 2005-2011.

1970-1971 MercedHatchery1970-1971AnnualReport.pdf

1971-1972 MercedHatchery1971-1972AnnualReport.pdf

1972-1973 MercedHatchery1972-1973AnnualReport.pdf

1973-1974 MercedHatchery1973-1974AnnualReport.pdf

1974-1975 MRHADPT0708.doc

1975-1976 MercedHatchery1975-76AnnualReport.pdf

1976-1977 MercedHatchery1976-1977AnnualReport.pdf

1977-1978 MercedHatchery1977-1978AnnualReport.pdf

1978-1979 MercedHatchery1978-1979AnnualReport.pdf

1979-1980 MercedHatchery1979-1980AnnualReport.pdf

1980-1981 MercedHatchery1980-1981AnnualReport.pdf

1981-1982 MercedHatchery1981-1982AnnualReport.pdf

1982-1983 MercedHatchery1982-1983AnnualReport.pdf

1983-1984 MercedHatchery1983-1984AnnualReport.pdf

1984-1985 MercedHatchery1984-1985AnnualReport.pdf

1985-1986 MercedHatchery1986-1986AnnualReport.pdf

1986-1987 MercedHatchery1986-1987AnnualReport.pdf

1987-1988 MercedHatchery1987-1988AnnualReport.pdf

1988-1989 MercedHatchery1988-1989AnnualReport.pdf

1989-1990 MercedHatchery1989-90AnnualReport.pdf

2000-2001 MRHADPT00-01.pdf

2001-2002 MRHADPT01-02.pdf

2002-2003 MRHADPT02-03.pdf

2003-2004 MRHADPT03-04.pdf

2004-2005 MRHADPT04-05.pdf

2005-2006 MRHADPT0506.doc

2006-2007 MRHADPT0607.doc

2007-2008 MRHADPT0708.doc

2008-2009 MRHADPT0809.doc

2009-2010 MRHADPT0910.doc

2010-2011 MRHADPT1011.doc

Merced River Fish Facility Releases 2003-2011. Excel File MerADRelease2003to2011.xls

Merced River Hatchery Egg and Fish Production 1976-2010. Excel File Update of Fish and eggs production 76-03.wb3

Mokelumne River

Brietler, Alex. 2012. Salmon Numbers Booming. Recordnet.com 6 January 2012. Retrieved from http://www.recordnet.com/apps/pbcs.dll/article?AID=/20120106/A_NEWS/201060326

EBMUD. 2002. Lower Mokelumne River upstream Fish Migration Monitoring Conducted at Woodbridge Irrigation District Dam August 2001 through March 2002. East Bay Municipal Utility District. August 2002. 2001 escapement report.pdf

Hanson, C.H. 1997. Acute temperature tolerance of juvenile Chinook salmon from the Mokelumne River. Hanson Environmental, Inc. Hanson_1997_AcuteTempTolerance.pdf

Hartwell, R.D. 1996. Upstream Migration and Spawning of Fall Run Chinook Salmon in the Mokelumne River, 1995, with Notes on Steelhead Spawning, Winter 1996. May 1996. Redd Report 1995.pdf

Heady, W. and J. Merz. 2007. Lower Mokelumne River Salmonid Rearing Habitat Restoration Project Summary Report. June 28, 2007 Draft. LOWER MOKELUMNE RIVER SALMONID REARING HABITAT RESTORATION PROJECT.pdf

Jeffres, C. and J.E. Merz. 1999. Angler Survey of the Lower Mokelumne River, July through December 1999. 1999 angler survey Merz and Jeffries.pdf

Marine, K.R., and D.A. Vogel. 1998. Mokelumne River Chinook Salmon and Steelhead Monitoring Program 1995-1996. A Technical Report on: Monitoring of the Upstream Spawning Migration of Chinook Salmon and Steelhead During September through December 1995. April 1998. 1995-1996 adult report.pdf

Marine, K.R., and D.A. Vogel. 1998. Mokelumne River Chinook Salmon and Steelhead Monitoring Program 1996-1997. A Technical Report on: Monitoring of the Upstream Spawning Migration of Chinook Salmon and Steelhead During September through December 1996. October 1998. 1996-1997 juvenile report.pdf

Marine, K.R., and D.A. Vogel. 1999. Mokelumne River Chinook Salmon and Steelhead Monitoring Program 1997-1998. A Technical Report on: Monitoring of the Upstream Spawning Migration of Chinook Salmon and Steelhead During September 1997 through February 1998. February 1999. 1997-1998 adult report.pdf

Marine, K.R., and D.A. Vogel. 1999. Lower Mokelumne River Fisheries Monitoring Program 1998-1999. A Technical Report on: Upstream Migration Monitoring at Woodbridge Dam During August 1998 through March 1999. December 1999. 1998-1999 adult report.pdf

Marine, K.R., and D.A. Vogel. 2000. Lower Mokelumne River Fisheries Monitoring Program 1999-2000. A Technical Report on: Upstream Migration Monitoring at Woodbridge Dam During August 1999 through March 2000. September 2000. 1999-2000 juvenile reports.pdf

Merz, J.E. and M.S. Saldate. Lower Mokelumne River Fish Community Survey. 1 January 1997 through 30 June 2004. FINAL Fish Community Report2.pdf

Miyamoto, J.J. and R.D. Hartwell. Population Trends and Escapement Estimation of Mokelumne River Fall-run Chinook Salmon (Oncorhynchus tshawytscha). POPULATION TRENDS AND ESCAPEMENT ESTIMATION OF MOKELUMNE RIVER FALL-RUN CHINOOK SALMON_Miyamoto.pdf

Mulchaey, B. and J.D. Setka. 2006. Fall-run Chinook salmon spawning survey, September 2005 through January 2006 Mokelumne River, California. Redd Report 2005.pdf

Mulchaey, B. and J.D. Setka. 2007. Salmonid Survey Spawning Report, October 2006 through March 2007, Mokelumne River, California. Redd Report 2006.pdf

Pagliughi, S.W. 2008. Lower Mokelumne River Fall-run Chinook Salmon and Winter-run Steelhead Redd Survey Report: October 2007 through March 2008. May 2008. Redd Report 07-Final.pdf

Setka, J.D. 1997. 1996 Lower Mokelumne River Chinook Salmon Oncorhynchus tshawytscha Spawning Survey Report. December 2, 1997. Redd Report 1996.pdf

Setka, J.D. 1997. Lower Mokelumne River Chinook Salmon (Oncorhynchus tshawytscha) Spawning Survey Report for Fall/Winter 1997. Redd Report 1997.pdf

Setka, J.D. 1999. Fall-run Chinook salmon and Steelhead trout spawning survey, September 1998 through January 1999 Mokelumne River, California. Redd Report 1998.pdf

Setka, J.D. 2000. Fall-run Chinook salmon and Steelhead trout spawning survey, September 1999 through January 2000 Mokelumne River, California. Redd Report 1999.pdf

Setka, J.D. 2001. Mokelumne River 2000-01 Spawning Survey. May 30, 2001. Redd Report 2000.pdf

Setka, J.D. 2002. Mokelumne River 2001-02 Spawning Survey. June 30, 2002. Redd Report 2001.pdf

Setka, J.D. 2003. Summary of fall-run Chinook salmon and steelhead trout spawning in the Mokelumne River, California 1996-2003. Mokelumne CHS & STT spawning_1996-2003.pdf

Setka, J.D. and J. Bishop. 2003. Fall-run Chinook salmon and Steelhead trout spawning survey, September 2002 through March 2003 Mokelumne River, California. Redd Report 2002.pdf

Vogel, D.A. and K.R. Marine. 1994. Mokelumne River Chinook Salmon and Steelhead Monitoring Program 1992-1993. A Technical Report on Evaluation of the Downstream Migration of Juvenile Chinook Salmon and Steelhead in the Lower Mokelumne River and the Sacramento-San Joaquin Delta (January – July 1993). April 1994. 1992-1993 juvenile report.pdf

Vogel, D.A. and K.R. Marine. 1996. Mokelumne River Chinook Salmon and Steelhead Monitoring Program 1993-1994. A Technical Report on Evaluation of the Downstream Migration of Juvenile Chinook Salmon and Steelhead in the Lower Mokelumne River and the Sacramento-San Joaquin Delta (January – July 1991). June 1996. 1993-1994 juvenile report.pdf

Vogel, D.A. and K.R. Marine. 1998. Mokelumne River Chinook Salmon and Steelhead Monitoring Program 1994-1995. A Technical Report on Evaluation of the Downstream Migration of Juvenile Chinook Salmon and Steelhead in the Lower Mokelumne River and the Sacramento-San Joaquin Delta (January – July 1995). April 1998. 1994-1995 juvenile report.pdf

Vogel, D.A. and K.R. Marine. 1998. Mokelumne River Chinook Salmon and Steelhead Monitoring Program 1995-1996. A Technical Report on Evaluation of the Downstream Migration of Juvenile Chinook Salmon and Steelhead in the Lower Mokelumne River and the Sacramento-San Joaquin Delta (January – July 1996). October 1998. 1995-1996 juvenile report.pdf

Vogel, D.A. and K.R. Marine. 1999. Mokelumne River Chinook Salmon and Steelhead Monitoring Program 1996-1997. A Technical Report on Evaluation of the Downstream Migration of Juvenile Chinook Salmon and Steelhead in the Lower Mokelumne River and the Sacramento-San Joaquin Delta (January – July 1997). February 1999. 1996-1997 juvenile report.pdf

Vogel, D.A. and K.R. Marine. 1999. Mokelumne River Chinook Salmon and Steelhead Monitoring Program 1997-1998. A Technical Report on Evaluation of the Downstream Migration of Juvenile Chinook Salmon and Steelhead in the Lower Mokelumne River and the Sacramento-San Joaquin Delta (December 1997 – July 1998). September 1999. 1997-1998 juvenile report.pdf

Vogel, D.A. and K.R. Marine. 2000. Lower Mokelumne River Fisheries Monitoring Program 1998-1999. A Technical Report on Downstream Migration Monitoring at Woodbridge Dam During December 1998 through July 1999. March 2000. 1998-1999 juvenile report.pdf

Vogel, D.A. and K.R. Marine. 2000. Lower Mokelumne River Fisheries Monitoring Program 1999-2000. A Technical Report on Downstream Migration Monitoring at Woodbridge Dam During December 1999 through July 2000. November 2000. 1999-2000 juvenile reports.pdf

Workman, M.L. 1999. An Assessment of the Downstream Migration of Juvenile Chinook Salmon (Oncorhynchus tshawytscha) in the Lower Mokelumne River, California Thesis. Spring 1999. Workman final thesis chinook downstream migration.pdf

Workman, M.L. 2001. Lower Mokelumne River Upstream Fish Migration Monitoring Conducted at Woodbridge Irrigation District Dam, August 2000 through April 2001. 2000 escapement report.pdf

Workman, M.L. 2002. Downstream Migration Monitoring at Woodbridge Dam on the Lower Mokelumne River, CA. December 2000 – July 2001. July 2002. 2001juvenile report.pdf

Workman, M.L. 2002. Downstream Migration Monitoring at Woodbridge Dam on the Lower Mokelumne River, CA. December 2001 – July 2002. September 2002. 2002juvenile report.pdf

Workman, M.L. 2003. Downstream Migration Monitoring at Woodbridge Dam on the Lower Mokelumne River, CA. December 2002 – July 2003. September 2003. 2003juvenile report.pdf

Workman, M.L. 2003. Lower Mokelumne River Upstream Fish Migration Monitoring Conducted at Woodbridge Irrigation District Dam, August 2002 through July 2003. August 2003. 2002 escapement report.pdf

Workman, M.L. 2004. Downstream Fish Migration Monitoring at Woodbridge Irrigation District Dam Lower Mokelumne River, January 2004 – June 2004. September 2004. 2004 juvenile report.pdf

Workman, M.L. 2004. Lower Mokelumne River Upstream Fish Migration Monitoring Conducted at Woodbridge Irrigation District Dam, August 2003 through July 2004. August 2004. 2003-04 escapement report.pdf

Workman, M.L. 2005. Downstream Fish Migration Monitoring at Woodbridge Irrigation District Dam Lower Mokelumne River, January 2005 through July 2005. September 2005. 2005 juvenile report.pdf

Workman, M.L. 2005. Lower Mokelumne River Upstream Fish Migration Monitoring Conducted at Woodbridge Irrigation District Dam, August 2004 through July 2005. August 2005. 2004-2005 escapement report.pdf

Workman, M.L. 2006. Lower Mokelumne River Fall run Chinook Salmon Escapement Report, October through December 2005. September 2006. 2005-06 Escapement report.pdf

Workman, M.L. 2006. Downstream Fish Migration Monitoring at Woodbridge Irrigation District Dam Lower Mokelumne River, December 2005 through July 2006. September 2006. 2006 juvenile report final.pdf

Workman, M.L. and E.T. Rible. 2007. Lower Mokelumne River Fall run Chinook Salmon Escapement Report, October 2006 through January 2007. September 2007. 2006-07 Escapement report.pdf

Workman, M.L., C.E. Hunter, M.S. Saldate, and J.L. Shillam. 2007. Downstream Fish Migration Monitoring at Woodbridge Irrigation District Dam Lower Mokelumne River, December 2006 through July 2007. December 2007. 2007 juvenile report final.pdf

Workman, M.L., E.T. Rible, and J.L. Shillam. 2008. Lower Mokelumne River Fall-run Chinook Salmon Escapement Report, October 2007 through January 2008. April 2008. 2007-08 Escapement report.pdf

Workman, M., J. Merz, W. Heady, and R. Kurth. 2008. Hatchery and natural Oncorhynchus mykiss emigration from the lower Mokelumne River, California: Distance traveled, migration rates, and paths to the Pacific Ocean. 2008 Hatchery & Nat O mykiss outmigration Mokelumne.pdf

Mokelumne River O. mykiss Redds 1998-2010. Excel file. Number Mok O mykiss Redds.xlsx

O. mykiss redd surveys in the Mokelumne River (summary). Word File. O. mykiss redd surveys_Mokelumne River.doc

Primary Occurrence periods of fall-run Chinook salmon and steelhead life stages in the Lower Mokelumne River. Figure. Table_3 2-3 Moke Salmonids.pdf

Mokelumne River Hatchery

Appendix 1. Chipps Island Tag Summary, Survival Calculations, and Expanded Fish Facility Recoveries for 2002 Yearling Fall run Mokelumne River releases. Appendix 1 Moke yearling delta survival.xls

CDFG. 2011 Lengths and Frequency of Tag Codes for Mokelumne Fall Chinook. Main Batch 0053-0056 – 110404-110405.xls

EBMUD. 2009 and 2010 Mokelumne Hatchery Straying & Return Rates (Preliminary Data). 2009 & 2010 Chinook straying rates.pdf

EBMUD. 2009 and 2010 Mokelumne Hatchery Straying & Return Rates – Additional Information (Preliminary Data). 2009 Mok_Mrcd_Amer_CWT Recoveries (2).pdf

EBMUD. Age 0 Chinook 2009 Fork Length Distributions. Age 0 chinook 2009 fork length distributions.pdf

EBMUD. Comparison of Movement, Habitat Use, and Diets of Mokelumne River Hatchery and Wild Juvenile Chinook Salmon, 2003-2006. (2 PowerPoints) volitional release january 07 mrtac.pdf

EBMUD. Downstream Counts of Juvenile Steelhead at Woodbridge Irrigation District Dam (WIDD). Stlhd Downstream Counts at WIDD.pdf

EBMUD. Mokelumne River Fish Hatchery – Chinook Salmon Production for Brood Years 2006 thru 2008. 2006-2009 CFM tagging rates & planting Summary.xls

Hatchery Production vs. Natural Production (PDF and Excel File). hatchery production v river production.xls

hatchery production v river production.pdf

Lower Mokelumne River Steelhead Population Estimate. STH pit tag summary _2_.pdf

Mokelumne River Fish Hatchery. Historical Escapement. mokelumne historical escapement (2).xls

Mokelumne River Fish Hatchery. Chinook Tables. May 2009. MRFH Chinook tables 5-09.xls

Mokelumne River Fish Hatchery. Preliminary Release Records 1988 thru 2005. MRFH Releases 1988 thru 2005.xls

Mokelumne River Fish Hatchery. Steelhead Tables. May 2009. MRFH Steelhead tables 5-09.xls

Steelhead Recoveries. Copy of STH RECOVERIES (2).xls

Summary of Coded Wire Tag Recovery Data for Hatchery and Naturally Reared Chinook Salmon in the Mokelumne River during Return Years 2002 and 2004. Summary of 2002_2004 CWT Recovery and Straying.pdf

Sacramento River

Grover, A., A. Low, P. Ward, J. Smith, M. Mohr, D. Viele, C. Tracy. 2004. Recommendations for Developing Fishery Management Plan Conservation Objectives for Sacramento River Winter Chinook and Sacramento River Spring Chinook Progress Report. March 2004. Grover et al 2004 – Recommendations for developing fishery management objectives for w-r and s-r.pdf

Killam, D. 2004. Sacramento River Winter-Run Chinook Salmon Escapement Survey April – September 2003. California Department of Fish and Game, Northern California-North Coast Region, Sacramento River Salmon and Steelhead Assessment Project. SRSSAP Technical Report No. 04-1. 2003_WRCarcassSurveyReport.pdf

Killam, D. 2006. Sacramento River Winter-Run Chinook Salmon Carcass Survey Summary Report for years 1996-2006. California Department of Fish and Game, Northern California-North Coast Region, Sacramento River Salmon and Steelhead Assessment Project. SRSSAP Technical Report No. 06-4. 2006WR_SummaryReport.pdf

Killam, D. 2006. Sacramento River Winter-Run Chinook Salmon Escapement Survey April – September 2005. California Department of Fish and Game, Northern California-North Coast Region, Sacramento River Salmon and Steelhead Assessment Project. SRSSAP Technical Report No. 06-2. FINAL_WR_2005_Report.pdf

Killam, D. 2006. Sacramento River Winter-Run Chinook Salmon Escapement Survey April – September 2004. California Department of Fish and Game, Northern California-North Coast Region, Sacramento River Salmon and Steelhead Assessment Project. SRSSAP Technical Report No. 06-1. FINAL_WR_2004_Report.pdf

Killam, D. 2007 Chinook Salmon Escapement Summary into selected Waterways of the Upper Sacramento River Basin. California Department of Fish and Game. Power Point Presentation. 2007_USBR_Results_SEPWT_Mtg.ppt

Killam, D. and C. Harvey-Arrison. 2006. Chinook Salmon Populations for the Upper Sacramento River Basin in 2005. California Department of Fish and Game, Northern California-North Coast Region, Sacramento River Salmon and Steelhead Assessment Project. SRSSAP Technical Report No. 06-3. 2005_Chinook_Salmon_Pop_USRB.pdf

Killam, D. and B. Kreb. 2008. Chinook Salmon Populations for the Upper Sacramento River Basin in 2007. Pacific States Marine Fisheries Commission. California Department of Fish and Game, Northern California Region, Sacramento River Salmon and Steelhead Assessment Project. SRSSAP Technical Report No. 08-4. 2007_Chinook_Salmon_Populations_for_the_USRB.pdf

Lindley, S.T., C. B. Grimes, M. S. Mohr, W. Peterson, J. Stein, J. T. Anderson, L.W. Botsford, , D. L. Bottom, C. A. Busack, T. K. Collier, J. Ferguson, J. C. Garza, A. M. Grover, D. G. Hankin, R. G. Kope, P. W. Lawson, A. Low, R. B. MacFarlane, K. Moore, M. Palmer-Zwahlen, F. B. Schwing, J. Smith, C. Tracy, R. Webb, B. K. Wells, T. H. Williams. 2009. What caused the Sacramento River fall Chinook stock collapse? Pre-publication report to the Pacific Fishery management Council. March 18, 2009. Salmon Decline 2009.pdf

Martin, C.D., P.D. Gaines, and R.R. Johnson. 2001. Estimating the abundance of Sacramento River juvenile winter Chinook salmon with comparisons to adult escapement. Red Bluff Research Pumping Plant Report Series, Volume 5. U.S. Fish and Wildlife Service, Red Bluff, California. Martin et al 2001.pdf

NMFS. 2010. Endangered Species Act Section 7 Consultation Biological Opinion. Authorization of Ocean Salmon Fisheries Pursuant to the Pacific Coast Salmon Fishery Management Plan and Additional Protective Measures as it affects Sacramento River Winter Chinook Salmon. File No. 151422SWR2009PR00139. April 30, 2010 NMFS 2010 – Winter-run ocean fishery biological opinion.pdf

Snider, B. and R.G. Titus. 2000. Timing, Composition and Abundance of Juvenile Anadromous Salmonid Emigration in the Sacramento River near Knights Landing October 1997-September 1998. California Department of Fish and Game, California Department of Water Resources. 2000 Snider and titus.pdf

Stillwater Sciences. 2006. Sacramento River Ecological Flows Study: State of the System Report. Public Review Draft. November 22, 2006. Sac R Ecological Flow Study.pdf

Chinook Salmon Populations: Sacramento River System, 1971 – 2008. Excel File. 2008_DRAFT_GrandTab.xls

Upper Sacramento River Aerial Redd Summary Data, 1969 – 2010. Excel File. ALL_REDD_SUMMARY_2-4-10-web_.xls

San Joaquin River

Dauble, D., D. Hankin, J.J. Pizzimenti and P. Smith. 2010. The Vernalis Adaptive Management Program (VAMP): Report of the 2010 Review Panel. May 11, 2010. 2010-VAMP-Peer-Review-Panel-Report.pdf

San Joaquin River Group Authority. 2010. 2009 Annual Technical Report on Implementation and Monitoring of the San Joaquin River Agreement and Vernalis Adaptive Management Plan (VAMP). January 2010. 2009-SJRGA-Annual-Technical-Report.pdf

San Joaquin River Group Authority. 2009. 2008 Annual Technical Report on Implementation and Monitoring of the San Joaquin River Agreement and Vernalis Adaptive Management Plan (VAMP). January 2009. VAMP 2008.pdf

San Joaquin River Restoration website link. SanJoaquin_Link.doc

Region 3 – North Coast

North-Central California Coast Technical Recovery Team (Brian Spence, Eric Bjorkstedt, Rick Macedo, Weldon Jones, David Fuller, David Hankin, John Carlos Garza, Jerry Smith). 2005. An Analysis of Historical Population Structure for Evolutionarily Significant Units of Chinook Salmon, Coho Salmon and Steelhead in the North-Central California Coast Recovery Domain. NOAA-TM-NMFS-SWFSC-382. October 2005. TRT_PopStructure_North-CentralCACoast_Oct2005.pdf

North-Central California Coast Technical Recovery Team (Brian Spence, Eric Bjorkstedt, Rick Macedo, Weldon Jones, David Fuller, David Hankin, John Carlos Garza, Jerry Smith). 2007. A Framework for Assessing the Viability of Threatened and Endangered Salmon and Steelhead in North-Central California Coast Recovery Domain. Public Review Draft. June 14, 2007. TRT_North-Central CA Coast Recovery Domain_June2007.pdf

Steelhead

NMFS. 2007. 2007 Federal Recovery Outline for the Distinct Population segment of Northern California Steelhead. National Marine Fisheries Service, Southwest Regional Office. 2007_Federal_Recovery_Outline_DPS_NC_Steelhead.pdf

Mad River Hatchery

CDFG. 2006. Hatchery and Genetic Management Plan for Mad River Hatchery Winter-run Steelhead. Prepared for National Marine Fisheries Service. HGMP_MadRiver_Steelhead_200603.pdf

Region 4 – Central Coast

Chinook

NMFS. 2007. 2007 Federal Recovery Outline for the Evolutionarily Significant Unit of California Coastal Chinook Salmon. National Marine Fisheries Service, Southwest Regional Office. 2007_Recovery_Outline_CC_Chinook_ESU.pdf

Coho

NOAA. 1999. Central California Coast Coho Salmon ESU Map. National Oceanic and Atmospheric Administration, National Marine Fisheries Service, habitat Conservation Division, 525 N.E. Oregon St, Suite 410, Portland, Oregon. Coho Cntrl CA Coast ESU map.pdf

Steelhead

NMFS. 2007. 2007 Federal Recovery Outline for the Distinct Population Segment of South-Central California Coast Steelhead. National Marine Fisheries Service, Southwest Regional Office. 2007_Recovery_Outline_DPS_S-Central_CA_Coast_Steelhead.pdf

NMFS. 2007. 2007 Federal Recovery Outline for the Distinct Population Segment of Central California Coast Steelhead. National Marine Fisheries Service, Southwest Regional Office. CentralCoast Steelhead Recovery Plan.pdf

South-Central California Coast Technical Recovery Team (Boughton, D., P. Adams, E. Anderson, C. Fusaro, E. Keller, E. Kelley, L. Lentsch, J. Nielsen, K. Perry, H. Regan, J. Smith, C. Swift, L. Thompson, and F. Watson). 2007. Viability Criteria for Steelhead of the South-Central and Southern California Coast. NOAA-TM-NMFS-SWFSC-XXX. March 2007. TRT_South-Central_Southern CA Coast Recovery Domain_Mar2007.pdf

Satterthwaite, W.H., M.P. Beakes, E.M. Collins, D.R. Swank, J.E Merz, R.G. Titus, S.M Sogard, and M. Mangel. 2009. Steelhead Life History on California”™s Central Coast: Insights from a state-dependent model. Transaction of the American Fisheries Society 138: 532-548.

Warm Spring Hatchery

FISHPRO. 2004. Hatchery and Genetic Management Plans for Russian River Fish Production Facilities Coho Salmon and Steelhead. U.S. Army Corps of Engineers, National Marine Fisheries Service, and California Department of Fish and Game. HGMP_WarmSprings_Coho_Steelhead_200410.pdf

Region 5 – Southern California

Coho

CDFG. 1995. Report to the Fish and Game Commission: A Status Review of the Coho Salmon (Oncorhynchus kisutch) in California South of San Francisco Bay. March 1995. Coho Status South SFB-1995.pdf

Steelhead

NMFS (Boughton, D.A., P.B. Adams, E. Anderson, C. Fusaro, E. Keller, E. Kelley, L. Lentsch, J. Nielsen, K. Perry, H. Regan, J. Smith, C. Swift, L. Thompson, and F. Watson). 2006. Steelhead of the South-Central/Southern California Coast: Population Characterization for Recovery Planning. NOAA-TM-NMFS-SWFSC-394. SoCalCoast SteelheadPops.pdf

NMFS. 2007. 2007 Federal Recovery Outline for the Distinct Population Segment of Southern California Coast Steelhead. National Marine Fisheries Service, Southwest Regional Office. 2007_Recovery_Outline_DPS_Southern_CA_Coast_Steelhead.pdf

General Reference Materials

Anon. 2007. DNA sampling compares success rate of hatchery-based enhancement programs. Hatchery International Volume 8, Issue 3. May/June 2007. Anon 2007 Hatchery International.pdf

Anon. Hatchery Impacts on the Upper Willamette River Chinook salmon and Steelhead ESUs. 17 pgs. Anonymous Hatchery Impacts Willamette R.pdf

Bilby, R.E., P.A. Bisson, C.C. Coutant, D. Goodman, R. B. Gramling, S. Hanna, E.J. Loudenslager, L. McDonald, D.P. Philipp, and B. Riddell. 2003. Review of Salmon and Steelhead Supplementation. ISAB 2003-3. Independent Scientific Advisory Board for the Northwest Power Planning Council, National Marine Fisheries Service, and the Columbia River Basin Indian Tribes., 851 SW 6th Avenue, Suite 1100, Portland, Oregon 97204 ISAB@nwppc.org. 26 p. Bibly et al 2003.pdf

Briggs, J.C. 1953. The behavior and reproduction of salmonid fishes in a small coastal stream. California Department of Fish and Game Fish Bulletin No. 94. 158p. Briggs 1953.pdf

Briggs, J.C. 1965. The original account of the Pacific Salmon. Copeia No. 3. 1p. Briggs 1965.pdf

Buckland-Nicks, J.A., M. Gillis, and T.E. Reimchen. 2011. Neural network detected in a presumed vestigial trait: ultrastructure of the salmonid adipose fin. Proceeding of the Royal Society: Biological Sciences. July 6, 2011. Buckland-Nicks et al 2011 Ultrastructure of salmonid adipose fin.pdf

CDFG. State Hatchery Policies – Fish Health Policies. Hatchery POLICIES.doc

CDFG. Operations Manual Fish Stocking and Fish Health. California DFG Opeations Manual Fish Stocking and Fish Health.pdf

CDFG. 2005. Anadromous Fish Hatcheries. Power Point Presentation. ANADHATCHERY060905.pps

CDFG. 2010. Health Assessment, Disease Certification and Disease Diagnostic Defined. California Department of Fish and Game. June 24, 2010. Health Assessement and Disease Cert Explanation.doc

CDFG. 2011. Accessing the CalFish Salmonid Abundance Database (Guide). Updated 1/21/2011. Available online at http://www.calfish.org/. CalAbundanceGuide_updated22Jan2011.pdf

CDFG. 2001. California”™s Living Resources: A status report – Salmonids. California Department of Fish and Game. December 2001. DFG 2001 salmon overview.pdf

CDFG. 2003. Department of Fish and Game celebrates 130 years of serving California. Outdoor California. November-December 1999. DFG 2003 130 years history.doc

CDFG. 2007. Take Permit Application. DFG 2007 Take Coverage for Anadromous Fish Research and Mon.pdf

CDFG. 2007. CDFG 4(d) limit #7 Research Program Conditions. National Oceanic and Atmospheric Administration, National Marine Fisheries Service, Southwest Region. DFG SIGNED -2007 4d Program Final approval letter.pdf

CDFG and National Marine Fisheries Service Southwest Region Joint Hatchery Review Committee. 2001. Final Report on Anadromous Salmonid Fish Hatcheries in California. December 3, 2001. JointHatcheryCommittee_Hatchery_FinalReport_2001.pdf

Cech, J.J. and C.A. Myrick. 1999. Steelhead and Chinook Salmon Bioenergetics: Temperature, Ration, and Genetic Effects. University of California Water Resources Center, Technical Completion Reports. Paper 885. Cech and Myrick 1999.pdf

Coots, M. 1954. A preliminary review of the factors influencing freshwater survival and distribution of Pacific salmon (Genus Oncorhynchus). U.S. Fish and Wildlife Service. Coots 1954.pdf

Corn, L. 1992. The Listing of a species: Legal definition and biological realities. Specialist Environment and Natural Resources Policy Division. Corn 1992.txt

Crawford, B.A. and S.M. Rumsey. 2011. Guidance for Monitoring Recovery of Pacific Northwest Salmon and Steelhead listed Under the Federal Endangered Species Act. NMFS NW Region. January 2011. RME-Guidance.pdf

Gerstung, E.R. 1981. Status and Management of the Coast Cutthroat Trout (Salmo clarki clarki) in California. California Department of Fish and Game, Sacramento, California. Gerstung 1981 Cutthroat trout.pdf

Hoffman, A. and P.L. Pattillo. 2007. The practical application of mark-selective fisheries. American Fisheries Society Symposium 49, 2007. Washington Department of Fish and Wildlife. Hoffmann and Pattillo 2007.pdf

Hatchery Scientific Review Group (HSRG)-Lars Mobrand (chair), John Barr, Lee Blankenship, Don Campton, Trevor Evelyn, Tom Flagg, Conrad Mahnken, Robert Piper, Paul Seidel, Lisa Seeb and Bill Smoker. 2004. Hatchery Reform: Principles and Recommendations of the HSRG. Long Live the Kings, 1305 Fourth Avenue, Suite 810, Seattle, WA 98101 (available from http://www.hatcheryreform.org). HSRG_Princ_Recs_Report_Full_Apr04.pdf

Hatchery Scientific Review Group (HSRG)””Peter Paquet (chair), Andrew Appleby, John Barr, Lee Blankenship, Don Campton, Mike Delarm, Trevor Evelyn, David Fast, Tom Flagg, Jeffrey Gislason, Paul Kline, Des Maynard (alternate), George Nandor, Paul Seidel, Stephen Smith. 2009. Columbia River Hatchery Reform System-Wide Report. February 2009. (available from http://www.hatcheryreform.us). 01_HSRG Final Systemwide Report.pdf

ICF Jones & Stokes. 2010. Hatchery and Stocking Program Environmental Impact Report/Environmental Impact Statement. Final. January. (ICF J&S 00264.08) (SCH #2008082025). Sacramento, CA. Prepared for the California Department of Fish and Game and U.S. Fish and Wildlife Service, Sacramento, CA. Available online at: http://www.dfg.ca.gov/news/pubnotice/hatchery/. Volume 1 Part 1 – Volume-I_Part-I_Text_8b_2-sided.pdf

Independent Scientific Review Panel and Independent Scientific Advisory Board. 2009. Tagging Report: A comprehensive review of Columbia River Basin fish tagging technologies and programs. ISRP/ISAB 2009-1. March 17, 2009. isrpisab2009-1.pdf

Integrated Hatchery Operations Team. 1995. Policies and Procedures for Columbia Basin Anadromous Salmonid Hatcheries, Annual Report 1994. Report to Bonneville Power Administration, Contract No. 1992BI60629, Project No. 199204300, 119 electronic pages (BPA Report DOE/BP-60629) IHOT STANDARDS.pdf

Kope, R. 2007. Incidental Mortality in Mark-Selective Salmon Fisheries (presentation at 2007 AFS). September 5, 2007. Selective Fisheries Kope_AFS_9_5_07_11am.pdf

Leitritz, E. 1959. Fish Bulletin No. 107. Trout and Salmon Culture (Hatchery Methods). Leitritz_Trout and Salmon Culture.pdf

Leitritz, E. 1970. A history of California”™s hatcheries 1870-1960. California Department of Fish and Game Fish Bulletin No. 150. 114 p. Leitritz 1970.pdf

Leitritz, E. and E. Lewis. 1976. Trout and Salmon Culture (Hatchery Methods). California Department of Fish and Game Fish Bulleting 164. 197 p. Leitritz and Lewis 1976.pdf

MacKinlay, D. 200X. Are there inherent behavioural differences between wild and cultured juvenile salmon? Fisheries and Oceans Canada, 555 West Hastings St., Vancouver V6B 5G3 Canada. MacKinlay Behavior.pdf

McElhany, P, M.H. Rucklelshaus, M.J. Ford, T.C. Wainwright, and E.P. Bjorkstedt. 2000. Viable Salmonid Populations and the Recovery of Evolutionarily Significant Units. NOAA Technical Memorandum NMFS-NWFSC-42. NMFS 2000 VSP.pdf

Moyle, P.B., J.A. Israel, and S.E. Purdy. 2008. Salmon, Steelhead and Trout in California: Status of an Emblematic Fauna. University of California, Davis, Center for Watershed Sciences. 2008 Moyle report Salmon Steelhead Trout- Status.pdf

Native Fish Society. 2007. Hatcheries stand in the way of wild salmon recovery. Native Fish Society Hatcheries 12-06-07.pdf

NMFS. 2006. Federal and State Endangered Species Act Status for California Anadromous Fish as of April 20, 2006. NMFS ESA list 2006.pdf

NMFS. 2001. Performance Standards and Indicators for the Use of Artificial Production for Anadromous and Resident Fish Populations in the Pacific Northwest. January 17, 2001. NMFS Performance Standards 2001.pdf

National Oceanic & Atmospheric Administration. 2010. Letter to Pacific Fishery Management Council on Salmon Guidance. March 2, 2010. NOAA_Letter-PFMC_Salmon_Guidance_030210.pdf

NMFS. 2009. Endangered Species Act Status of West Coast Salmon & Steelhead. Updated July 1, 2009. ESA Status-7-09.pdf

NMFS. 2005. Updated Status of Federally Listed ESUs of West Coast Salmon and Steelhead. NOAA Technical Memorandum NMFS-NWFSC-66. Updated Status of Federally listed ESUs – NOAA 2005.pdf

Pacific Fishery Management Council. 2003. Pacific Coast Salmon Plan: Fishery Management Plan for Commercial and Recreational Salmon Fisheries Off the Coasts of Washington, Oregon and California as Revised Through Amendment 14. Adopted March 1999. Pacific Fishery Management Council, 7700 NE Ambassador Place, Suite 200, Portland, Oregon. Harvest Ocean Fisheries KLAM_FMP_PFMC_2003.pdf

Pacific Fishery Management Council. 2008. Review of 2007 Ocean Salmon Fisheries. Pacific Fishery Management Council, 7700 NE Ambassador Place, Suite 101, Portland, Oregon. Salmon_Review_2007_Final.pdf

Pacific Fishery Management Council. 2009. Review of 2008 Ocean Salmon Fisheries. Pacific Fishery Management Council, 7700 NE Ambassador Place, Suite 101, Portland, Oregon. Salmon_Review_2008_Final.pdf

Pacific Fishery Management Council. 2009. Preseason Report II: Analysis of proposed regulatory options for 2009 ocean salmon fisheries. Pacific Fishery Management Council, 7700 NE Ambassador Place, Suite 101, Portland, Oregon. Preseason_Report_II_2009.pdf

Pacific Fishery Management Council. 2009. Preseason Report I: Stock Abundance Analysis for 2009 Ocean Salmon Fisheries. Pacific Fishery Management Council, 7700 NE Ambassador Place, Suite 101, Portland, Oregon. Preseason_Report_I_2009.pdf

Pacific Fishery Management Council. 2009. Preseason Report III: Analysis of Council Adopted Management Measures for 2009 Ocean Salmon Fisheries. Pacific Fishery Management Council, 7700 NE Ambassador Place, Suite 101, Portland, Oregon. Preseason_Report_III_2009.pdf

Pacific Fishery Management Council. 2010. Review of 2009 Ocean Salmon Fisheries. Pacific Fishery Management Council, 7700 NE Ambassador Place, Suite 101, Portland, Oregon. Salmon_Review_2009_Final.pdf

Pacific Fishery Management Council. 2010. Preseason Report I: Stock Abundance Analysis for 2010 Ocean Salmon Fisheries. Pacific Fishery Management Council, 7700 NE Ambassador Place, Suite 101, Portland, Oregon. Salmon_Preseason_Rpt_I_FEBRUARY_2010.pdf

Pacific Fishery Management Council. 2010. Preseason Report III: Analysis of Council Adopted Management Measures for 2010 Ocean Salmon Fisheries. Pacific Fishery Management Council, 7700 NE Ambassador Place, Suite 101, Portland, Oregon. Preseason_Report_III_2010.pdf

Pacific Fishery Management Council. 2011. Preseason Report I: Stock Abundance Analysis and Environmental Assessment Part 1 for 2011 Ocean Salmon Fishery Regulations. Pacific Fishery Management Council, 7700 NE Ambassador Place, Suite 101, Portland, Oregon. Preseason_Report_I_2011.pdf

Pacific Fishery Management Council. 2011. Preseason Report II: Analysis of proposed regulatory options for 2010 ocean salmon fisheries. Pacific Fishery Management Council, 7700 NE Ambassador Place, Suite 101, Portland, Oregon. Preseason_Report_II_2010.pdf

Pacific Fishery Management Council. 2011. Review of 2010 Ocean Salmon Fisheries. Pacific Fishery Management Council, 7700 NE Ambassador Place, Suite 101, Portland, Oregon. Salmon_Review_2010_Final.pdf

Pacific Fishery Management Council. 2011. Preseason Report II: Proposed Alternatives and Environmental Assessment Part 2 for 2011 Ocean Salmon Fishery Regulations. Pacific Fishery Management Council, 7700 NE Ambassador Place, Suite 101, Portland, Oregon. Preseason_Report_II_2011.pdf

Pacific Northwest Aquatic Monitoring Partnership. 2010. Special Publication. Tagging, Telemetry and Marking Measures for Monitoring Fish, A compendium of new and recent science for use in informing technique and modalities. January 2010. Editors: Keith Wolf and Jennifer O”™Neal. TTM_Compendium_2010.pdf

Piper, R.G., I.B. McElwain, L.E. Orme, J.P. McCraren, L.G. Fowler and J.R. Leondar. 1982. Fish Hatchery Management Piper_FishHatcheryManagement.pdf

Pert, H.A. 1993. Winter food habits of coastal juvenile steelhead and Coho salmon in Pudding Creek, Northern California. Master”™s Thesis, University of California, Berkley. 75 p. Pert 1987.pdf

Quinn, T. Homing, Straying, and Colonization. NOAA Tech Memo NMFS NWFSC-30: Genetic Effects of Straying of Non-Native Hatchery Fish into Natural Populations. Quinn Homing, Straying, and Colonization.txt

Rodgers, R.W. and P.F. Chapman. 1991. Variation in Iodine Concentration During Water Hardening of Salmonid Eggs. Informational Report 5. Washington Department of Fisheries, Salmon Culture Division, Olympia, Washington. Iodo varying conc_1991.pdf

Scofield, N.B. 1929. The Status of Salmon in California. California Fish and Game.

Senn, H., J. Mack, and L. Rothfus. 1984. Compendium of Low-Cost Pacific Salmon and Steelhead Trout Production Facilities and Practices in the Pacific Northwest. Fish Management Consultants. Contract DE-AC79-83BP12745, Project 83-353. Bonneville Power Administration. Portland, Oregon. 513 pages. Senn et al 1984 Compednium of Low-Cost Pacific Salmon an Stt trout.pdf

USFWS (2004). Aquatic Animal Health Policy (713 FW2). Available online at: e1713fw1.html USFWS Aquatic Animal Heatlh.pdf

Vile, J.S., T.A Friesen, and M.J. Reesman. 2004. Diets of juvenile salmonids and introduced fishes of the Lower Willamette River. Oregon Department of Fish and Wildlife, Columbia River Investigations, Clackamas, Oregon. August 2004. Vile 2004.pdf

___. 2002. Ceratomyxa Shasta Fact Sheet – 2002. Pacific Corp 2002 Ceratamyxa.pdf

California Production Numbers. Excel File. updated CA Production_SN.xls

Chinook

Allen, M.A. and T.J. Hassler. 1986. Species Profiles: Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Pacific Southwest): Chinook Salmon. Coastal Ecology Group, Waterways Experiment Station, U.S. Army Corps of Engineers. National Coastal Ecosystems Team, Division of Biological Services, Research and Development, U.S. Fish and Wildlife Service. Allen and Hassler 1986.pdf

Cavallo, B., P. Bergman, and J. Melgo. 2011. The Delta Passage Model. Cramer Fish Sciences. 13300 New Airport Rd. Suite 102, Auburn, CA 95602. Delta_Passage_Model.pdf

Hendrix, N. and S. Lindley. 2011. A General Overview of the Fall Chinook Salmon Life Cycle Production Model. R2 Resource Consultants, Inc. National Oceanic and Atmospheric Administration, National Marine Fisheries Service, South West Fisheries Science Center. January 11, 2011. Hendrix Expert Panel Overview 01.11.11.ppt

Myers, J.M., R.G. Kope, G.J. Bryant, D. Teel, L.J. Lierheimer, T.C. Wainwright, W.S. Grand, F.W. Waknitz, K. Neely, S.T. Lindley, and R.S. Waples. 1998. Status review of Chinook salmon from Washington, Idaho, Oregon, and California. U.S. Dept. Commer., NOAA Tech. Memo. NMFS-NWFSC-35, 443 p. NOAA_NMFS_NWFSC Chinook 19XX.pdf

Preseason Report, Chapter II: Chinook Salmon Assessment. February 2010. Salmon_PreI_ChpII_FEBRUARY_2010.pdf

Coho

CDFG. 2004. Recovery Strategy for California coho salmon. Report to the California Fish and Game Commission. 594 pp. Available online at: http://www.dfg.ca.gov/nafwb.cohorecovery/. CDFG CohoRecoveryStrategy2004.pdf

Garza, J.C. 2003. Coho TRT03-Summary Statistics. Draft material for HSRP use only. cohotrt03analyses.pdf

Steelhead

Busby, P.J., T.C. Wainwright, G.J. Bryant, L.J. Lierheimer, R.S. Waples, F.W. Waknitz, and I.V. Lagomarsino. 1996. Status review of west coast steelhead from Washington, Idaho, Oregon, and California. NOAA Technical Memorandum NMFS-NWFSC-27 127 p. Busby et al 1996.pdf

CDFG. 2007. California Steelhead Fishing Report-Restoration Card: A Report to the Legislature. California Department of Fish and Game. Jackson 2007 SH Leg report.pdf

Cramer & Associates. 1995. The Status of Steelhead Populations in California in Regards to the Endangered Species Act. Association of California Water Agencies. Special Report Submitted to National Marine Fisheries Service. Cramer_et_al_steelhead_status_CA_1995.pdf

CDFG. 1998. Strategic Plan for Management of Northern California Steelhead Trout. California Department of Fish and Game. February 4, 1998. DFG 1998.pdf

Coulter, I., C. Justice, and S. Cramer. 2009. Flow and temperature effects on life history diversity of Oncorhynchus mykiss in the Yakima River basin. Cramer Fish Sciences, Gresham, Oregon. Coulter Justice and Cramer Draft_Article (2-23-09).doc

Courter, I., B. Lister, S. Cramer, J. Vaughan, S. Duery, and D. Child. 2010. Evaluation of effects of resident rainbow trout and hatchery strays on steelhead production within the Middle Columbia River Oncorhynchus mykiss Evolutionarily Significant Unit. Report Submitted to NOAA Fisheries. Courter et al 2010 Columbia SH straying.pdf

Light, J.T., C.K. Harris, and R.L. Burgner. 1989. Ocean distribution and migration of steelhead (Oncorhynchus mykiss, formerly Salmo gairdneri). Fisheries Research Institute. Submitted to International North Pacific Fisheries Commission. Light et al 1989 SH ocean migration.pdf

McEwan D. and T.A. Jackson. 1996. Steelhead restoration and management plan for California. California Department of Fish and Game. Inland Fisheries Division Report. Sacramento, CA. 246 p. McEwan and Jackson 1996.pdf

NOAA. 2006. Endangered and Threatened Species: Final Listing Determinations for 10 Distinct Population Segments of West Coast Steelhead; Final Rule. Federal Register 71(3). January 5, 2006. Federal Register 2006 Steelhead.pdf

Perry, K. 2004. Stock status of steelhead in California. Pacific State Marine Fisheries Commission. http://www.psmfc.org/Meeting%20Presentations/Stock_Status/Presentations/CA_Stock_Status_SH_2004.PPT/ Perry 2004.pdf

Satterthwaite, T.D. 1988. Influence of maturity on straying rates of summer steelhead into the Rogue River, Oregon. California Fish and Game 74(4): 203-207. Satterwaite 1988 Rogue R SH straying.pdf

Unger, P. 2004. Release hatchery steelhead earlier or at smaller size to reduce their predation on juvenile wild salmon and steelhead. Oroville Facilities Relicensing Efforts Environmental Work Group Draft Report No. 02042004. 3 p. Unger 2004.pdf

Wales, J.H. 1939. Classification of “rainbow” trout. Comments to C.M. Mottley. 1939. “Rainbows”, Should they be classified as Irideus, Shasta or Gairdnerii. Salmon and Trout Magazine No. 83. June 1939. 2 p. Wales 1939.pdf

West Coast Steelhead Biological Review Team. 1997. Status Review Update for Deferred and Candidate ESUs of West Coast Steelhead (Lower Columbia River, Upper Willamette River, Oregon Coast, Klamath Mountains Province, Northern California, Central Valley, and Middle Columbia River ESUs). December 19, 1997. WCBRT 1997-steelhead3.pdf

Wilzbach, M.A. 2008. Movement of resident rainbow trout (Oncorhynchus mykiss) transplanted below barriers to anadromy in Freshwater creek, California. Final Report. Humboldt State University, Arcata, California. June 2008. Wilzbach 2008 Freshwater Creek Final Report.pdf

Zedonis, P.A. 1992. The biology of the juvenile steelhead (Oncorhynchus mykiss) in the Mattole River Estuary/Lagoon, California. A Thesis Presented to The Faculty of Humboldt State University. May 1992. Zedonis 1992 Thesis Mattole R juvenile SH.pdf

Christie, M.R., M.L. Marine and M.S. Blouin. 2011. “Who are the missing parents? Grand-parentage analysis identifies multiple sources of gene flow into a wild population. Molecular Ecology, 2011.

General Maps

CDFG. 2009. Fish Hatchery and Stocking Program: Hatchery locations. CDFG_Hatchery Locations Map.pdf

CDFG. 2009. Fish Hatchery and Stocking Program: Planting locations. CDFG_Outplanting Locations Map.pdf

Geology.com. 2010. Rivers of California. Available online at: http://www.geology.com/. Geology.com – california rivers-map.gif

Maps of the World. 2009. California Rivers. Available online at: http://www.mapsoftheworld.com/. mapsoftheworld – California Rivers.jpg

NOAA. 2010. NOAA Fisheries Southwest Region Recovery Domains. NOAA_RecoveryDomains Map.pdf